Construct: ORF ccsbBroadEn_11134
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013371.1_s300c1, BRDN0000390302
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC2A2 (6514)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6514 | SLC2A2 | solute carrier family 2 mem... | NM_001278659.2 | 100% | 100% | |
| 2 | human | 6514 | SLC2A2 | solute carrier family 2 mem... | XM_024453720.1 | 100% | 100% | |
| 3 | human | 6514 | SLC2A2 | solute carrier family 2 mem... | NM_001278658.2 | 86.6% | 86.6% | 1_162del |
| 4 | human | 6514 | SLC2A2 | solute carrier family 2 mem... | XM_011513087.2 | 68.9% | 68.9% | 1_474del |
| 5 | human | 6514 | SLC2A2 | solute carrier family 2 mem... | NM_000340.2 | 66.9% | 66.9% | 1_519del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1119
- ORF length:
- 1053
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTA TATCGGTGAA ATTGCTCCAA CCGCTCTCAG GGGAGCACTT GGCACTTTTC 121 ATCAGCTGGC CATCGTCACG GGCATTCTTA TTAGTCAGAT TATTGGTCTT GAATTTATCT 181 TGGGCAATTA TGATCTGTGG CACATCCTGC TTGGCCTGTC TGGTGTGCGA GCCATCCTTC 241 AGTCTCTGCT ACTCTTTTTC TGTCCAGAAA GCCCCAGATA CCTTTACATC AAGTTAGATG 301 AGGAAGTCAA AGCAAAACAA AGCTTGAAAA GACTCAGAGG ATATGATGAT GTCACCAAAG 361 ATATTAATGA AATGAGAAAA GAAAGAGAAG AAGCATCGAG TGAGCAGAAA GTCTCTATAA 421 TTCAGCTCTT CACCAATTCC AGCTACCGAC AGCCTATTCT AGTGGCACTG ATGCTGCATG 481 TGGCTCAGCA ATTTTCCGGA ATCAATGGCA TTTTTTACTA CTCAACCAGC ATTTTTCAGA 541 CGGCTGGTAT CAGCAAACCT GTTTATGCAA CCATTGGAGT TGGCGCTGTA AACATGGTTT 601 TCACTGCTGT CTCTGTATTC CTTGTGGAGA AGGCAGGGCG ACGTTCTCTC TTTCTAATTG 661 GAATGAGTGG GATGTTTGTT TGTGCCATCT TCATGTCAGT GGGACTTGTG CTGCTGAATA 721 AGTTCTCTTG GATGAGTTAT GTGAGCATGA TAGCCATCTT CCTCTTTGTC AGCTTCTTTG 781 AAATTGGGCC AGGCCCGATC CCCTGGTTCA TGGTGGCTGA GTTTTTCAGT CAAGGACCAC 841 GTCCTGCTGC TTTAGCAATA GCTGCATTCA GCAATTGGAC CTGCAATTTC ATTGTAGCTC 901 TGTGTTTCCA GTACATTGCG GACTTCTGTG GACCTTATGT GTTTTTCCTC TTTGCTGGAG 961 TGCTCCTGGC CTTTACCCTG TTCACATTTT TTAAAGTTCC AGAAACCAAA GGAAAGTCTT 1021 TTGAGGAAAT TGCTGCAGAA TTCCAAAAGA AGAGTGGCTC AGCCCACAGG CCAAAAGCTG 1081 CTGTAGAAAT GAAATTCCTA GGAGCTACAG AGACTGTGTA CCCAACTTTC TTGTACAAAG 1141 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac