Construct: ORF ccsbBroadEn_11202
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001640.1_s300c1, BRDN0000396776
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRIP6 (7205)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7205 | TRIP6 | thyroid hormone receptor in... | NM_003302.3 | 99.4% | 99.3% | 114_119delCCAGCC;688G>A;918A>G |
| 2 | mouse | 22051 | Trip6 | thyroid hormone receptor in... | NM_011639.3 | 82.5% | 85.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1488
- ORF length:
- 1422
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC GGGGCCCACC TGGCTGCCCC CGAAGCAGCC GGAGCCCGCC AGAGCCCCTC 121 AGGGGAGGGC GATCCCCCGC GGCACCCCGG GGCCACCACC GGCCCACGGA GCAGCACTCC 181 ACCCCAGGGT CAATTTTTGC CCCCTTCCAT CTGAGCAGTG TTACCAGGCC CCAGGGGGAC 241 CGGAGGATCG GGGGCCGGCG TGGGTGGGGT CCCATGGAGT ACTCCAGCAC ACGCAGGGGC 301 TCCCTGCAGA CAGGGGGGGC CTTCGCCCTG GAAGCCTGGA CGCCGAGATA GACTTGCTGA 361 GCAGCACGCT GGCCGAGCTG AATGGGGGTC GGGGTCATGC GTCACGGCGA CCAGACCGAC 421 AGGCATATGA GCCCCCGCCA CCTCCTGCCT ACCGCACGGG CTCCCTGAAG CCAAATCCAG 481 CCTCGCCGCT CCCAGCGTCT CCCTATGGGG GCCCCACTCC AGCCTCTTAC ACTACCGCCA 541 GCACCCCGGC TGGCCCAGCC TTCCCCGTGC AAGTGAAGGT GGCACAGCCA GTGAGGGGCT 601 GCGGCCCACC CAGGCGGGGA GCCTCTCAGG CCTCTGGGCC CCTCCCGGGC CCCCACTTTC 661 CTCTCCCAGG CCGAGGTGAA GTCTGGGGGC CTGGCTATAG GAGCCAGAGA GAGCCAGGGC 721 CAGGGGCCAA AGAGGAAGCT GCTGGGATCT CTGGCCCTGC AGGAAGAGGA AGAGGAGGCG 781 AGCACGGGCC CCAGGTGCCC CTGAGCCAGC CTCCAGAGGA TGAGCTGGAT AGGCTGACGA 841 AGAAGCTGGT TCACGACATG AACCACCCGC CCAGCGGGGA GTACTTTGGC CAGTGTGGTG 901 GCTGCGGAGA AGATGTGGTT GGGGATGGGG CTGGGGTTGT GGCCCTTGAT CGCGTCTTTC 961 ACGTGGGCTG CTTTGTGTGT TCTACATGCC GGGCCCAGCT TCGCGGCCAG CATTTCTACG 1021 CCGTGGAGAG GAGGGCATAT TGCGAGGGCT GCTACGTGGC CACCCTGGAG AAATGTGCCA 1081 CGTGCTCCCA GCCCATCCTG GACCGGATCC TGCGGGCTAT GGGGAAGGCC TACCACCCTG 1141 GCTGCTTCAC CTGCGTGGTG TGTCACCGCG GCCTCGACGG CATCCCCTTC ACAGTGGATG 1201 CTACGAGCCA GATCCACTGC ATTGAGGACT TTCACAGGAA GTTTGCCCCA AGATGCTCAG 1261 TGTGCGGTGG GGCCATAATG CCTGAGCCAG GTCAGGAGGA GACTGTGAGA ATTGTTGCTC 1321 TGGATCGAAG TTTTCACATT GGCTGTTACA AGTGCGAGGA GTGTGGGCTG CTGCTCTCCT 1381 CTGAGGGCGA GTGTCAGGGC TGCTACCCGC TGGATGGGCA CATCTTGTGC AAGGCCTGCA 1441 GCGCCTGGCG CATCCAGGAG CTCTCAGCCA CCGTCACCAC TGACTGCTGC CCAACTTTCT 1501 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac