Construct: ORF ccsbBroadEn_11202

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001640.1_s300c1, BRDN0000396776
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TRIP6 (7205)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7205 TRIP6 thyroid hormone receptor in... NM_003302.3 99.4% 99.3% 114_119delCCAGCC;688G>A;918A>G
2 mouse 22051 Trip6 thyroid hormone receptor in... NM_011639.3 82.5% 85.8% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1488
ORF length:
1422
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC GGGGCCCACC TGGCTGCCCC CGAAGCAGCC GGAGCCCGCC AGAGCCCCTC
121AGGGGAGGGC GATCCCCCGC GGCACCCCGG GGCCACCACC GGCCCACGGA GCAGCACTCC
181ACCCCAGGGT CAATTTTTGC CCCCTTCCAT CTGAGCAGTG TTACCAGGCC CCAGGGGGAC
241CGGAGGATCG GGGGCCGGCG TGGGTGGGGT CCCATGGAGT ACTCCAGCAC ACGCAGGGGC
301TCCCTGCAGA CAGGGGGGGC CTTCGCCCTG GAAGCCTGGA CGCCGAGATA GACTTGCTGA
361GCAGCACGCT GGCCGAGCTG AATGGGGGTC GGGGTCATGC GTCACGGCGA CCAGACCGAC
421AGGCATATGA GCCCCCGCCA CCTCCTGCCT ACCGCACGGG CTCCCTGAAG CCAAATCCAG
481CCTCGCCGCT CCCAGCGTCT CCCTATGGGG GCCCCACTCC AGCCTCTTAC ACTACCGCCA
541GCACCCCGGC TGGCCCAGCC TTCCCCGTGC AAGTGAAGGT GGCACAGCCA GTGAGGGGCT
601GCGGCCCACC CAGGCGGGGA GCCTCTCAGG CCTCTGGGCC CCTCCCGGGC CCCCACTTTC
661CTCTCCCAGG CCGAGGTGAA GTCTGGGGGC CTGGCTATAG GAGCCAGAGA GAGCCAGGGC
721CAGGGGCCAA AGAGGAAGCT GCTGGGATCT CTGGCCCTGC AGGAAGAGGA AGAGGAGGCG
781AGCACGGGCC CCAGGTGCCC CTGAGCCAGC CTCCAGAGGA TGAGCTGGAT AGGCTGACGA
841AGAAGCTGGT TCACGACATG AACCACCCGC CCAGCGGGGA GTACTTTGGC CAGTGTGGTG
901GCTGCGGAGA AGATGTGGTT GGGGATGGGG CTGGGGTTGT GGCCCTTGAT CGCGTCTTTC
961ACGTGGGCTG CTTTGTGTGT TCTACATGCC GGGCCCAGCT TCGCGGCCAG CATTTCTACG
1021CCGTGGAGAG GAGGGCATAT TGCGAGGGCT GCTACGTGGC CACCCTGGAG AAATGTGCCA
1081CGTGCTCCCA GCCCATCCTG GACCGGATCC TGCGGGCTAT GGGGAAGGCC TACCACCCTG
1141GCTGCTTCAC CTGCGTGGTG TGTCACCGCG GCCTCGACGG CATCCCCTTC ACAGTGGATG
1201CTACGAGCCA GATCCACTGC ATTGAGGACT TTCACAGGAA GTTTGCCCCA AGATGCTCAG
1261TGTGCGGTGG GGCCATAATG CCTGAGCCAG GTCAGGAGGA GACTGTGAGA ATTGTTGCTC
1321TGGATCGAAG TTTTCACATT GGCTGTTACA AGTGCGAGGA GTGTGGGCTG CTGCTCTCCT
1381CTGAGGGCGA GTGTCAGGGC TGCTACCCGC TGGATGGGCA CATCTTGTGC AAGGCCTGCA
1441GCGCCTGGCG CATCCAGGAG CTCTCAGCCA CCGTCACCAC TGACTGCTGC CCAACTTTCT
1501TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)