Construct: ORF ccsbBroadEn_11403

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010319.1_s300c1, BRDN0000385756
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM53B (9679)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9679 FAM53B family with sequence simila... NM_014661.4 72.1% 71.5% 908_924delinsT;929T>C;932_1266del
2 mouse 77938 Fam53b family with sequence simila... NM_175268.4 62.6% 63.8% (many diffs)
3 mouse 77938 Fam53b family with sequence simila... NM_212473.1 62.6% 63.8% (many diffs)
4 mouse 77938 Fam53b family with sequence simila... NM_001347630.1 57% 59.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
981
ORF length:
915
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT GATGGTCCTA AGTGAAAGCC TCAGCACCCG GGGAGCTGAC TCCATTGCAT
121GTGGGACCTT CAGCCGTGAA CTGCACACGC CAAAGAAGAT GAGTCAAGGA CCTACACTTT
181TCTCTTGTGG AATTATGGAA AATGACAGAT GGCGAGACCT GGACAGGAAA TGCCCTCTTC
241AGATTGACCA ACCGAGCACC AGCATCTGGG AATGCCTGCC TGAAAAGGAC AGCTCACTAT
301GGCACCGGGA GGCAGTGACC GCCTGCGCTG TGACCAGTCT GATCAAAGAC CTCAGCATCA
361GCGACCACAA CGGGAACCCC TCAGCACCCC CTAGCAAGCG CCAGTGCCGC TCACTGTCCT
421TCTCCGATGA GATGTCCAGT TGCCGGACAT CATGGAGGCC CTTGGGCTCC AAAGTCTGGA
481CTCCCGTGGA AAAGAGACGC TGCTACAGCG GGGGCAGCGT CCAGCGCTAT TCCAACGGCT
541TCAGCACCAT GCAGAGGAGT TCCAGCTTCA GCCTCCCTTC CCGGGCCAAC GTGCTCTCCT
601CACCCTGCGA CCAGGCAGGA CTCCACCACC GATTTGGAGG GCAGCCCTGC CAAGGGGTGC
661CAGGCTCAGC CCCGTGTGGA CAGGCAGGTG ACACCTGGAG CCCTGACCTG CACCCCGTGG
721GAGGAGGCCG GCTGGACCTG CAGCGGTCCC TCTCTTGCTC ACATGAGCAG TTTTCCTTTG
781TGGAATACTG TCCTCCCTCA GCCAACAGCA CACCTGCCTC AACACCAGAG CTGGCGAGAC
841GCTCCAGCGG CCTTTCCCGC AGCCGCTCCC AGCCGTGTGT CCTTAACGAC AAGAAGGTCG
901GTGTTAAAAG GCGGCGCCCT GAAGAAGTGC AAGAGCAGAG GCCTTCTCTA GACCTTGCCA
961AGATGGCACA GATAGCCCCA AGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
1021attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)