Construct: ORF ccsbBroadEn_11425
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000412.1_s300c1, BRDN0000396041
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FARP2 (9855)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9855 | FARP2 | FERM, ARH/RhoGEF and plecks... | NM_001282983.2 | 100% | 100% | |
| 2 | human | 9855 | FARP2 | FERM, ARH/RhoGEF and plecks... | NM_001282984.2 | 97.8% | 97.8% | (many diffs) |
| 3 | human | 9855 | FARP2 | FERM, ARH/RhoGEF and plecks... | XM_017005419.2 | 84.9% | 81.2% | (many diffs) |
| 4 | human | 9855 | FARP2 | FERM, ARH/RhoGEF and plecks... | XM_017005420.1 | 83.4% | 80.5% | (many diffs) |
| 5 | human | 9855 | FARP2 | FERM, ARH/RhoGEF and plecks... | XM_005247050.3 | 82.1% | 81.3% | (many diffs) |
| 6 | human | 9855 | FARP2 | FERM, ARH/RhoGEF and plecks... | NM_014808.4 | 60.8% | 60.2% | (many diffs) |
| 7 | human | 9855 | FARP2 | FERM, ARH/RhoGEF and plecks... | XM_011512233.1 | 60.4% | 59.8% | (many diffs) |
| 8 | human | 9855 | FARP2 | FERM, ARH/RhoGEF and plecks... | XM_011512234.1 | 60.4% | 59.8% | (many diffs) |
| 9 | human | 9855 | FARP2 | FERM, ARH/RhoGEF and plecks... | XM_024453259.1 | 60.4% | 59.8% | (many diffs) |
| 10 | human | 9855 | FARP2 | FERM, ARH/RhoGEF and plecks... | XM_017005417.1 | 55.6% | 54.4% | (many diffs) |
| 11 | human | 9855 | FARP2 | FERM, ARH/RhoGEF and plecks... | XM_011512235.1 | 55.2% | 54% | (many diffs) |
| 12 | human | 9855 | FARP2 | FERM, ARH/RhoGEF and plecks... | XM_011512236.1 | 52.3% | 51.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2007
- ORF length:
- 1941
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG GGAGATAGAA GGAACATACA GAGTCCTGCA GACTGCAGGG ATGCGCTTGG 121 GTGCCCAGAC CCCTGTGGGA GTTAGCACCC TTGAGCCTGG GCAGACTCTC TTGCCCAGAA 181 TGCAAGAGAA GCACCTGCAC CTCAGAGTAA AGCTGCTGGA CAACACCATG GAAATATTTG 241 ACATTGAGCC TAAATGCGAT GGCCAGGTAT TACTGACACA AGTGTGGAAG CGTTTAAACC 301 TGGTAGAATG TGACTACTTC GGGATGGAGT TTCAAAATAC TCAGTCCTAC TGGATTTGGC 361 TTGAACCTAT GAAACCCATC ATTAGGCAAA TACGAAGGCC AAAGAATGTG GTGCTTCGCC 421 TAGCTGTAAA ATTTTTTCCA CCTGATCCTG GTCAGCTACA AGAAGAATAT ACAAGATACT 481 TGTTTGCCTT GCAACTTAAG AGAGACCTGC TGGAAGAGCG TTTGACCTGT GCTGACACCA 541 CAGCGGCCCT TCTCACGTCC CATCTCCTGC AGTCGGAAAT AGGAGATTAC GATGAAACGC 601 TGGACCGAGA GCACCTCAAA GTGAACGAGT ATTTGCCTGG CCAGCAGCAC TGCCTTGAGA 661 AGATACTAGA ATTCCATCAG AAGCACGTGG GCCAGACACC TGCTGAGTCG GATTTCCAGG 721 TGCTCGAAAT TGCTCGAAAG TTGGAAATGT ACGGCATCAG ATTTCACATG GCTTCTGACA 781 GGGAAGGAAC CAAGATTCAA CTGGCAGTTT CCCACATGGG TGTACTCGTG TTCCAGGGCA 841 CCACCAAAAT CAACACTTTC AACTGGTCCA AGGTCCGTAA ACTAAGCTTC AAGAGGAAAA 901 GATTTCTTAT CAAACTTCAT CCAGAGGTTC ATGGACCTTA CCAGGACACA TTAGAATTTT 961 TGTTGGGTAG TAGAGATGAA TGTAAGAACT TCTGGAAGAT TTGTGTGGAG TATCACACCT 1021 TTTTTAGACT TTTGGACCAA CCTAAGCCAA AAGCAAAAGC CGTCTTCTTC AGCCGGGGCT 1081 CCTCCTTCAG ATACAGTGGA AGAACTCAGA AACAACTAGT AGATTATTTC AAAGACAGTG 1141 GAATGAAGAG AATTCCATAT GAAAGAAGGC ACAGCAAGAC CCACACGTCC GTTCGAGCTC 1201 TGACTGCAGA CCTACCAAAA CAGAGCATCT CATTCCCCGA GGGATTGAGG ACTCCTGCCT 1261 CCCCATCTTC AGCGAATGCC TTTTACTCGC TCTCTCCCTC CACTCTGGTC CCCTCTGGCC 1321 TGCCAGAGTT TAAGGACAGC AGCAGCTCCC TCACAGATCC CCAGGTTTCC TACGTCAAGA 1381 GTCCAGCTGC AGAGAGGCGC AGTGGAGCAG TGGCTGGAGG CCCCGACACA CCATCGGCCC 1441 AGCCCCTCGG GCCCCCCGCA CTCCAGCCTG GTCCAGGCCT TTCCACGAAG AGTCCTCAGC 1501 CTTCTCCCTC CAGCCGGAAG AGCCCCCTGA GTCTGAGCCC TGCATTTCAG GTGCCTTTGG 1561 GCCCAGCTGA ACAGGGCTCA TCCCCACTCC TGAGCCCTGT CCTCAGTGAT GCTGGCGGAG 1621 CCGGGATGGA CTGCGAGGAG CCCAGACACA AGCGCGTGCC TGCAGACGAG GCCTACTTCA 1681 TAGTCAAAGA GATTCTCGCT ACAGAACGAA CATACCTCAA GGATTTAGAA GTTATTACCG 1741 TGTGGTTCCG CAGCGCAGTG GTGAAGGAGG ACGCCATGCC TGCGACTCTG ATGACGCTGC 1801 TCTTCTCCAA CATCGATCCC ATCTATGAGT TCCACAGAGG CTTCCTGCGC GAGGTGGAGC 1861 AGAGGCTGGC ACTCTGGGAA GGGCCCTCCA AAGCCCACAC AAAAGGCAGT CATCAACGAA 1921 TCGGGGACAT CCTGCTCAGG AACATGCGCC AGTTAAAGGT GTTCCAGCTC CACGAAGGGC 1981 ATGTAGCAGG GGTCACAAAA ATGGAGTACC CAACTTTCTT GTACAAAGTt ggcattataa 2041 gaaagcattg cttatcaatt tgttgcaacg aac