Construct: ORF ccsbBroadEn_11441
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012832.1_s300c1, BRDN0000396402
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- HNRNPDL (9987)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9987 | HNRNPDL | heterogeneous nuclear ribon... | NM_031372.3 | 71.6% | 71.6% | 1_357del |
| 2 | human | 9987 | HNRNPDL | heterogeneous nuclear ribon... | NM_001207000.1 | 58% | 58% | 1_357del;1020_1021ins171 |
| 3 | human | 9987 | HNRNPDL | heterogeneous nuclear ribon... | NR_003249.2 | 21.1% | 1_892del;1796_4262del | |
| 4 | mouse | 50926 | Hnrnpdl | heterogeneous nuclear ribon... | NM_016690.4 | 66.9% | 71.4% | (many diffs) |
| 5 | mouse | 50926 | Hnrnpdl | heterogeneous nuclear ribon... | XM_006535074.3 | 66.9% | 71.4% | (many diffs) |
| 6 | mouse | 50926 | Hnrnpdl | heterogeneous nuclear ribon... | XM_011249510.2 | 66.9% | 71.4% | (many diffs) |
| 7 | mouse | 50926 | Hnrnpdl | heterogeneous nuclear ribon... | XM_006535076.4 | 53.8% | 57.8% | (many diffs) |
| 8 | mouse | 50926 | Hnrnpdl | heterogeneous nuclear ribon... | XM_006535077.4 | 53.8% | 57.8% | (many diffs) |
| 9 | mouse | 50926 | Hnrnpdl | heterogeneous nuclear ribon... | XM_030254661.1 | 53.8% | 57.8% | (many diffs) |
| 10 | mouse | 50926 | Hnrnpdl | heterogeneous nuclear ribon... | XR_389282.3 | 30.9% | (many diffs) | |
| 11 | mouse | 50926 | Hnrnpdl | heterogeneous nuclear ribon... | NR_152866.1 | 29.5% | (many diffs) | |
| 12 | mouse | 50926 | Hnrnpdl | heterogeneous nuclear ribon... | XR_003955673.1 | 28.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 969
- ORF length:
- 903
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GGATATGAAC GAGTACAGCA ATATAGAGGA ATTCGCAGAG GGATCCAAGA 121 TCAACGCGAG CAAGAATCAG CAGGATGACG GTAAAATGTT TATTGGAGGC TTGAGCTGGG 181 ATACAAGCAA AAAAGATCTG ACAGAGTACT TGTCTCGATT TGGGGAAGTT GTAGACTGCA 241 CAATTAAAAC AGATCCAGTC ACTGGGAGAT CAAGAGGATT TGGATTTGTG CTTTTCAAAG 301 ATGCTGCTAG TGTTGATAAG GTTTTGGAAC TGAAAGAACA CAAACTGGAT GGCAAATTGA 361 TAGATCCCAA AAGGGCCAAA GCTTTAAAAG GGAAAGAACC TCCCAAAAAG GTTTTTGTGG 421 GTGGATTGAG CCCGGATACT TCTGAAGAAC AAATTAAAGA ATATTTTGGA GCCTTTGGAG 481 AGATTGAAAA TATTGAACTT CCCATGGATA CAAAAACAAA TGAAAGAAGA GGATTTTGTT 541 TTATCACATA TACTGATGAA GAGCCAGTAA AAAAATTGTT AGAAAGCAGA TACCATCAAA 601 TTGGTTCTGG GAAGTGTGAA ATCAAAGTTG CACAACCCAA AGAGGTATAT AGGCAGCAAC 661 AGCAACAACA AAAAGGTGGA AGAGGTGCTG CAGCTGGTGG ACGAGGTGGT ACGAGGGGTC 721 GTGGCCGAGG TCAGGGCCAA AACTGGAACC AAGGATTTAA TAACTATTAT GATCAAGGAT 781 ATGGAAATTA CAATAGTGCC TATGGTGGTG ATCAAAACTA TAGTGGCTAT GGCGGATATG 841 ATTATACTGG GTATAACTAT GGGAACTATG GATATGGACA GGGATATGCA GACTACAGTG 901 GCCAACAGAG CACTTATGGC AAGGCATCTC GAGGGGGTGG CAATCACCAA AACAATTACC 961 AGCCATACTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 1021 tttgttgcaa cgaac