Construct: ORF ccsbBroadEn_11456

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009753.1_s300c1, BRDN0000392937
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
OPTN (10133)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10133 OPTN optineurin NM_001008211.1 98.9% 98.9% 627_644del
2 human 10133 OPTN optineurin NM_001008212.2 98.9% 98.9% 627_644del
3 human 10133 OPTN optineurin NM_001008213.1 98.9% 98.9% 627_644del
4 human 10133 OPTN optineurin NM_021980.4 98.9% 98.9% 627_644del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1779
ORF length:
1713
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC CCATCAACCT CTCAGCTGCC TCACTGAAAA GGAGGACAGC CCCAGTGAAA
121GCACAGGAAA TGGACCCCCC CACCTGGCCC ACCCAAACCT GGACACGTTT ACCCCGGAGG
181AGCTGCTGCA GCAGATGAAA GAGCTCCTGA CCGAGAACCA CCAGCTGAAA GAAGCCATGA
241AGCTAAATAA TCAAGCCATG AAAGGGAGAT TTGAGGAGCT TTCGGCCTGG ACAGAGAAAC
301AGAAGGAAGA ACGCCAGTTT TTTGAGATAC AGAGCAAAGA AGCAAAAGAG CGTCTAATGG
361CCTTGAGTCA TGAGAATGAG AAATTGAAGG AAGAGCTTGG AAAACTAAAA GGGAAATCAG
421AAAGGTCATC TGAGGACCCC ACTGATGACT CCAGGCTTCC CAGGGCCGAA GCGGAGCAGG
481AAAAGGACCA GCTCAGGACC CAGGTGGTGA GGCTACAAGC AGAGAAGGCA GACCTGTTGG
541GCATCGTGTC TGAACTGCAG CTCAAGCTGA ACTCCAGCGG CTCCTCAGAA GATTCCTTTG
601TTGAAATTAG GATGGCTGAA GGAGAAGCAG AAGGGTCAGT AAAAGAAATC AAGCATAGTC
661CTGGGCCCAC GAGAACAGTC TCCACTGGCA CGAGCAGATC TGCAGATGGG GCCAAGAATT
721ACTTCGAACA TGAGGAGTTA ACTGTGAGCC AGCTCCTGCT GTGCCTAAGG GAAGGGAATC
781AGAAGGTGGA GAGACTTGAA GTTGCACTCA AGGAGGCCAA AGAAAGAGTT TCAGATTTTG
841AAAAGAAAAC AAGTAATCGT TCTGAGATTG AAACCCAGAC AGAGGGGAGC ACAGAGAAAG
901AGAATGATGA AGAGAAAGGC CCGGAGACTG TTGGAAGCGA AGTGGAAGCA CTGAACCTCC
961AGGTGACATC TCTGTTTAAG GAGCTTCAAG AGGCTCATAC AAAACTCAGC GAAGCTGAGC
1021TAATGAAGAA GAGACTTCAA GAAAAGTGTC AGGCCCTTGA AAGGAAAAAT TCTGCAATTC
1081CATCAGAGTT GAATGAAAAG CAAGAGCTTG TTTATACTAA CAAAAAGTTA GAGCTACAAG
1141TGGAAAGCAT GCTATCAGAA ATCAAAATGG AACAGGCTAA AACAGAGGAT GAAAAGTCCA
1201AATTAACTGT GCTACAGATG ACACACAACA AGCTTCTTCA AGAACATAAT AATGCATTGA
1261AAACAATTGA GGAACTAACA AGAAAAGAGT CAGAAAAAGT GGACAGGGCA GTGCTGAAGG
1321AACTGAGTGA AAAACTGGAA CTGGCAGAGA AGGCTCTGGC TTCCAAACAG CTGCAAATGG
1381ATGAAATGAA GCAAACCATT GCCAAGCAGG AAGAGGACCT GGAAACCATG ACCATCCTCA
1441GGGCTCAGAT GGAAGTTTAC TGTTCTGATT TTCATGCTGA AAGAGCAGCG AGAGAGAAAA
1501TTCATGAGGA AAAGGAGCAA CTGGCATTGC AGCTGGCAGT TCTGCTGAAA GAGAATGATG
1561CTTTCGAAGA CGGAGGCAGG CAGTCCTTGA TGGAGATGCA GAGTCGTCAT GGGGCGAGAA
1621CAAGTGACTC TGACCAGCAG GCTTACCTTG TTCAAAGAGG AGCTGAGGAC AGGGACTGGC
1681GGCAACAGCG GAATATTCCG ATTCATTCCT GCCCCAAGTG TGGAGAGGTT CTGCCTGACA
1741TAGACACGTT ACAGATTCAC GTGATGGATT GCATCATTTA CCCAACTTTC TTGTACAAAG
1801Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)