Construct: ORF ccsbBroadEn_11530
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007885.1_s300c1, BRDN0000387044
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARID3B (10620)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10620 | ARID3B | AT-rich interaction domain 3B | NM_006465.4 | 43.4% | 41.2% | (many diffs) |
| 2 | human | 10620 | ARID3B | AT-rich interaction domain 3B | NM_001307939.1 | 43.3% | 41.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 825
- ORF length:
- 759
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GCCACTTCAG CAGCAGCAGC AGCAGCAGCA GCAACAACAG AAGCAGCCAC 121 ACCTGGCTCC TCTGCAGATG GATGCCAGAG AGAAGCAGGG CCAGCAGATG AGAGAAGCCC 181 AGTTCTTGTA TGCCCAAAAG CTGGTCACAC AGCCGACTCT CCTTTCCGCC ACAGCTGGGA 241 GACCTTCTGG CAGCACTCCC TTAGGTCCCT TAGCCAGAGT TCCACCCACC GCAGCAGTGG 301 CCCAAGTGTT TGAACGGGGC AACATGAACT CAGAGCCTGA GGAAGAGGAC GGAGGTTTGG 361 AAGATGAGGA TGGGGATGAT GAAGTTGCAG AGGTGGCTGA GAAAGAAACC CAGGCTGCTT 421 CAAAATATTT TCATGTGCAG AAAGTAGCTC GCCAAGATCC CAGAGTGGCA CCCATGTCCA 481 ATCTACTTCC AGCACCAGGG CTCCCACCAC ATGGACAACA AGCTAAAGAA GACCATACCA 541 AAGATGCTTC CAAGGCCTCA CCTTCTGTCT CCACAGCAGG ACAGCCGAAC TGGAATCTGG 601 ATGAGCAGCT CAAGCAGAAT GGTGGTTTGG CCTGGAGTGA TGATGCAGAT GGAGGCCGGG 661 GAAGAGAGAT CTCTCGAGAT TTTGCCAAGC TGTATGAACT GGACGGTGAT CCTGAAAGGA 721 AAGAGTTCCT GGATGACCTC TTCGTCTTTA TGCAGAAGAG GGGTGAGTGT GCATCTACTC 781 ATCATTCCAA TTCAGGGAAT ACTGATAGAG TGCCTACTGT GTGCTACCCA ACTTTCTTGT 841 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c