Construct: ORF ccsbBroadEn_11689
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005689.1_s300c1, BRDN0000389337
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZCCHC14 (23174)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23174 | ZCCHC14 | zinc finger CCHC-type conta... | XR_243401.3 | 2% | 1_5274del;5407_6437del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 198
- ORF length:
- 132
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG TTCCGACACT GTCACGGCTG TGTTCCCAGC AGCGAAGGCC TCTGCGGAGC 121 TGCCAGTCGT CTTGAACGTG CATGGGCGGC GTGTGACATC TCCAGGGAGG CCGTCCGAAG 181 TCGAGAATCG TCAGCTGTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 241 gcttatcaat ttgttgcaac gaac