Construct: ORF ccsbBroadEn_11860
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013592.1_s300c1, BRDN0000394153
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TINAG (27283)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 27283 | TINAG | tubulointerstitial nephriti... | XM_011514497.2 | 32% | 27.9% | (many diffs) |
| 2 | human | 27283 | TINAG | tubulointerstitial nephriti... | XM_017010745.1 | 31.8% | 31.7% | 420_1314delinsG |
| 3 | human | 27283 | TINAG | tubulointerstitial nephriti... | NM_014464.4 | 29.3% | 29.2% | 420_1428delinsG |
| 4 | human | 27283 | TINAG | tubulointerstitial nephriti... | XM_006715062.2 | 25.5% | 25.4% | 0_1ins54;366_1374delinsG |
| 5 | human | 27283 | TINAG | tubulointerstitial nephriti... | XR_001743344.2 | 23.7% | 1_110del;530_1763delinsG |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 486
- ORF length:
- 420
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTG GACCGGATAT AAGATCTTAA TCTTCTCTTA TCTTACTACA GAAATCTGGA 121 TGGAGAAGCA GTATTTATCT CAAAGAGAAG TGGACCTAGA GGCTTATTTC ACTAGGAATC 181 ACACCGTTTT GCAAGGTACT CGATTCAAAA GAGCCATTTT CCAAGGGCAA TACTGTAGAA 241 ATTTTGGCTG TTGTGAAGAC AGAGATGATG GCTGTGTCAC TGAGTTCTAT GCGGCGAATG 301 CGTTGTGCTA CTGTGATAAA TTCTGTGACA GAGAAAATTC TGATTGCTGT CCTGACTACA 361 AGTCCTTTTG CCGTGAAGAG AAAGAATGGC CTCCTCACAC ACAGCCTTGG TATCCAGAAG 421 GTTGCTTCAA AGATGGTCAA CATTATGAAG AGGGATCAGT AATTAAAGAA AACTGCAACT 481 CCTGGTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 541 gttgcaacga ac