Construct: ORF ccsbBroadEn_12371
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007284.1_s300c1, BRDN0000390746
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57594 | HOMEZ | homeobox and leucine zipper... | NM_020834.3 | 95.6% | 95.6% | 1_72del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1644
- ORF length:
- 1578
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC TCCTAATAAA GAGGCCAGCG GTCTCAGTAG TTCACCAGCG GGGCTCATCT 121 GCCTCCCTCC AATCTCTGAG GAGCTACAGC TTGTGTGGAC GCAAGCAGCC CAGACCAGTG 181 AGCTAGACAG CAATGAACAC CTGCTCAAAA CCTTCAGCTA CTTTCCCTAT CCCAGCCTAG 241 CAGACATTGC CCTTCTCTGC CTACGTTATG GGTTGCAGAT GGAGAAAGTC AAGACTTGGT 301 TTATGGCCCA GCGCCTCCGC TGTGGTATTA GCTGGTCATC TGAAGAAATA GAAGAGACTC 361 GAGCCCGAGT AGTCTACCGT CGGGACCAAC TCCATTTCAA ATCCCTTCTC TCTTTTACTC 421 ATCATGCGGG ACGGCCCCCA GAGGAGGTGC CTCCTCCTCC AGTGCCAGCT CCAGAGCAAG 481 TTGGTATTGG AATAGGTCCT CCAACTCTTA GCAAGCCTAC CCAGACGAAA GGATTGAAGG 541 TAGAGCCTGA GGAGCCCTCT CAGATGCCAC CACTGCCACA GAGTCACCAG AAATTAAAGG 601 AGTCCCTGAT GACACCTGGC AGTGGAGCAT TCCCCTACCA ATCAGATTTT TGGCAACATC 661 TTCAAAGCAG TGGCCTCTCA AAGGAGCAGG CAGGCAGGGG TCCCAACCAG TCACATGGCA 721 TAGGTACTGC TTCCTGGAAC CACTCCACAA CCGTCCCCCA GCCACAAGCT CGGGATAAAC 781 CCCCACCAAT TGCATTAATT GCCAGTAGTT GTAAGGAGGA GTCAGCATCT AGTGTTACTC 841 CCTCTTCTTC CTCTACCTCT TCTTCTTTCC AGGTACTGGC TAATGGAGCT ACTGCCGCCT 901 CTAAACCCCT CCAGCCACTA GGCTGTGTCC CACAGTCAGT GTCACCCAGT GAACAGGCAT 961 TACCCCCACA TCTGGAACCA GCCTGGCCCC AAGGGCTACG GCATAACTCA GTACCAGGTA 1021 GAGTTGGCCC CACAGAGTAC CTTTCCCCAG ATATGCAACG CCAGCGAAAG ACCAAGCGCA 1081 AAACCAAAGA GCAGCTGGCT ATCCTTAAAT CCTTTTTTTT ACAGTGCCAG TGGGCACGGC 1141 GTGAGGATTA CCAAAAGTTA GAACAGATCA CTGGTTTACC TCGGCCTGAG ATCATTCAGT 1201 GGTTTGGTGA CACACGCTAT GCCTTGAAGC ATGGGCAACT AAAGTGGTTT CGGGACAACG 1261 CAGTACCTGG TGCCCCTAGT TTCCAAGACC CAGCAATTCC TACACCACCA CCATCAACCC 1321 GCTCCTTGAA CGAAAGGGCT GAGACACCAC CTCTGCCGAT CCCTCCACCC CCACCGGATA 1381 TACAACCCTT GGAGAGGTAC TGGGCAGCCC ACCAACAGCT ACGGGAAACT GATATCCCTC 1441 AATTGAGTCA GGCATCAAGG CTTAGCACCC AGCAGGTGCT GGATTGGTTT GACTCTCGAT 1501 TACCTCAGCC AGCTGAGGTG GTAGTTTGTC TAGATGAAGA AGAGGAAGAG GAGGAGGAAG 1561 AACTGCCAGA AGATGATGAG GAAGAGGAGG AGGAGGAGGA GGAAGATGAT GATGATGATG 1621 ATGATGATGT GATCATACAA GACTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa 1681 agcattgctt atcaatttgt tgcaacgaac