Construct: ORF ccsbBroadEn_12554
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007106.1_s300c1, BRDN0000393402
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GNPTAB (79158)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79158 | GNPTAB | N-acetylglucosamine-1-phosp... | XM_006719593.3 | 5.9% | 5.7% | (many diffs) |
| 2 | human | 79158 | GNPTAB | N-acetylglucosamine-1-phosp... | NM_024312.5 | 5.5% | 5.4% | (many diffs) |
| 3 | human | 79158 | GNPTAB | N-acetylglucosamine-1-phosp... | XM_011538731.2 | 2.9% | 2.3% | (many diffs) |
| 4 | mouse | 432486 | Gnptab | N-acetylglucosamine-1-phosp... | XM_006513848.2 | 5.6% | 5.6% | (many diffs) |
| 5 | mouse | 432486 | Gnptab | N-acetylglucosamine-1-phosp... | NM_001004164.3 | 5.3% | 5.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 279
- ORF length:
- 213
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT GTTCAAGCTC CTACAGAGAC AGACCTATAC CTGCCTGTCC CACAGGTATG 121 GGCTCTACGT GTGCTTCTTG GGCGTCGTTG TCACCATCGT CTCCGCCTTC CAGTTCGGAG 181 AGGTGGTTCT GGAATGGAGC CGAGATCAAT ACCATGTTTT GTTTGATTCC TATAGAGACA 241 ATATTGCTGG AAAGTCCTTT CAGAATCGGT CTGTGAGGTA CCCAACTTTC TTGTACAAAG 301 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac