Construct: ORF ccsbBroadEn_12937
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008069.1_s300c1, BRDN0000384910
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF616 (90317)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 400950 | C2orf91 | chromosome 2 open reading f... | NR_161189.1 | 3.2% | (many diffs) | |
| 2 | human | 90317 | ZNF616 | zinc finger protein 616 | NR_135823.1 | 3.1% | 1_3721del;3863_4484del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 207
- ORF length:
- 141
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG ATACTATGCA GCCATAGAAA GGAATGAGAT CATGTCCATT GCAGCGATGT 121 GGATGGAGCT GGAAGCCATT ATCCTCAGGA AACTAACACA GGAACAGAAA ATCAAACAGC 181 ACATGTTCTC ACTTAAAAGT GGAAGCTGCC CAACTTTCTT GTACAAAGTt ggcattataa 241 gaaagcattg cttatcaatt tgttgcaacg aac