Construct: ORF ccsbBroadEn_12962
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014892.1_s300c1, BRDN0000392496
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- UBXN11 (91544)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 91544 | UBXN11 | UBX domain protein 11 | NM_183008.2 | 60.7% | 54.4% | (many diffs) |
| 2 | human | 91544 | UBXN11 | UBX domain protein 11 | NM_145345.2 | 54.4% | 48.3% | (many diffs) |
| 3 | human | 91544 | UBXN11 | UBX domain protein 11 | NM_001077262.1 | 37.7% | 32% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1038
- ORF length:
- 972
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG CTCACCTTTG GCCTCCCTTA GCAAGACCCG AAAAGTGCCC CTGCCCTCGG 121 AGCCTATGAA TCCTGGGAGG CGAGGAATCC GCATCTATGG AGATGAAGAT GAGGTGGACA 181 TGTTGAGTGA TGGGTGTGGC TCGGAAGAAA AGATCTCAGT CCCTTCCTGC TATGGCGGCA 241 TAGGTGCCCC TGTGAGTCGG CAAGTCCCTG CATCCCATGA CTCGGAGCTG ATGGCCTTCA 301 TGACGAGGAA GTTGTGGGAC CTGGAGCAGC AGGTGAAGGC CCAGACTGAT GAGATACTGT 361 CCAAGGATCA GAAGATAGCG GCCCTAGAGG ACCTGGTGCA GACCCTCCGG CCACACCCAG 421 CCGAGGCAAC CCTGCAGCGG CAGGAGGAAC TGGAGACGAT GTGTGTGCAG CTGCAGCGGC 481 AGGTCAGGGA GATGGAGCGG TTCCTCAGTG ACTATGGCCT GCAGTGGGTG GGCGAGCCCA 541 TGGACCAGGA GGACTCAGAG AGCAAGACAG TCTCAGAGCA TGGCGAGAGG GACTGGATGA 601 CAGCCAAGAA GTTCTGGAAG CCAGGGGACT CATTGGCGCC CCCTGAGGTG GACTTTGACA 661 GGCTGCTGGC CAGCCTGCAG GATCTTAGTG AGCTGGTGGT AGAGGGTGAC ACCCAAGTGA 721 CACCAGTGCC CGGCGGGGCA CGGCTGCGTA CCCTCGAGCC CATCCCGCTG AAGCTCTACC 781 GGAATGGCAT CATGATGTTC GACGGGCCCT TCCAGCCCTT CTACGATCCC TCCACACAGC 841 GCTGCCTCCG AGACATATTG GATGGCTTCT TTCCCTCAGA GCTCCAGCGA CTGTACCCCA 901 ATGGGGTCCC CTTTAAGGTG ATAAGCTGCT CCTCAAACCA CACCTTTGGG GATTTTGAAG 961 GGAGTGGGGA TACACAGCCT CCCCAGACAC CTCCCATTCT GAGGGGAAGC CGCTGCACTC 1021 CCTGGGGGAC CCCAGTCTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 1081 gcttatcaat ttgttgcaac gaac