Construct: ORF ccsbBroadEn_12967
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012796.1_s300c1, BRDN0000386695
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BOC (91653)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 91653 | BOC | BOC cell adhesion associate... | NM_001301867.2 | 100% | 100% | |
| 2 | human | 91653 | BOC | BOC cell adhesion associate... | XM_017007455.1 | 100% | 100% | |
| 3 | human | 91653 | BOC | BOC cell adhesion associate... | XM_024453818.1 | 14.6% | 13.5% | (many diffs) |
| 4 | human | 91653 | BOC | BOC cell adhesion associate... | XM_005247897.3 | 14.2% | 13.1% | (many diffs) |
| 5 | human | 91653 | BOC | BOC cell adhesion associate... | NM_033254.4 | 13% | 12% | (many diffs) |
| 6 | human | 91653 | BOC | BOC cell adhesion associate... | XM_011513305.3 | 13% | 12% | (many diffs) |
| 7 | human | 91653 | BOC | BOC cell adhesion associate... | XM_017007451.2 | 13% | 12% | (many diffs) |
| 8 | human | 91653 | BOC | BOC cell adhesion associate... | NM_001301861.2 | 13% | 12% | (many diffs) |
| 9 | human | 91653 | BOC | BOC cell adhesion associate... | XM_005247891.3 | 13% | 12% | (many diffs) |
| 10 | human | 91653 | BOC | BOC cell adhesion associate... | XM_005247892.3 | 13% | 12% | (many diffs) |
| 11 | human | 91653 | BOC | BOC cell adhesion associate... | XM_017007450.2 | 13% | 12% | (many diffs) |
| 12 | human | 91653 | BOC | BOC cell adhesion associate... | XM_017007441.2 | 13% | 12% | (many diffs) |
| 13 | human | 91653 | BOC | BOC cell adhesion associate... | XM_017007442.2 | 13% | 12% | (many diffs) |
| 14 | human | 91653 | BOC | BOC cell adhesion associate... | XM_017007443.1 | 13% | 12% | (many diffs) |
| 15 | human | 91653 | BOC | BOC cell adhesion associate... | XM_017007444.1 | 13% | 12% | (many diffs) |
| 16 | human | 91653 | BOC | BOC cell adhesion associate... | XM_017007445.1 | 13% | 12% | (many diffs) |
| 17 | human | 91653 | BOC | BOC cell adhesion associate... | XM_017007446.1 | 13% | 12% | (many diffs) |
| 18 | human | 91653 | BOC | BOC cell adhesion associate... | XM_017007447.1 | 13% | 12% | (many diffs) |
| 19 | human | 91653 | BOC | BOC cell adhesion associate... | XM_017007448.1 | 13% | 12% | (many diffs) |
| 20 | human | 91653 | BOC | BOC cell adhesion associate... | XM_017007449.1 | 13% | 12% | (many diffs) |
| 21 | human | 91653 | BOC | BOC cell adhesion associate... | XR_001740359.2 | 9.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 537
- ORF length:
- 471
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT GCGTGGGACG ATGACGGCGT GGAGAGGAAT GAGGCCTGAG GTCACACTGG 121 CTTGCCTCCT CCTAGCCACA GCAGGCTGCT TTGCTGACTT GAACGAGGTC CCTCAGGTCA 181 CCGTCCAGCC TGCGTCCACC GTCCAGAAGC CCGGAGGCAC TGTGATCTTG GGCTGCGTGG 241 TGGAACCTCC AAGGATGAAT GTAACCTGGC GCCTGAATGG AAAGGAGCTG AATGGCTCGG 301 ATGATGCTCT GGGTGTCCTC ATCACCCACG GGACCCTCGT CATCACTGCC CTTAACAACC 361 ACACTGTGGG ACGGTACCAG TGTGTGGCCC GGATGCCTGC GGGGGCTGTG GCCAGCGTGC 421 CAGCCACTGT GACACTAGCC AGTGAGTCTG CTCCTTTGCC TCCCTGCCAT GGTGCGGTCC 481 CTCCTCATCT CTCCCACCCT GAAGCCCCCA CCATTCATGC TGCCTCTTGT TACTCTTACC 541 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 601 aac