Construct: ORF ccsbBroadEn_13017
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006608.1_s300c1, BRDN0000456431
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SAAL1 (113174)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 113174 | SAAL1 | serum amyloid A like 1 | NM_138421.3 | 99.7% | 99.7% | 16_17insCGC;963A>G |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1491
- ORF length:
- 1425
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CCGCAACCCC TCGCCGCCGC CGCCGCCGGG TCGCGACAAG GAGGAGGAGG 121 AGGAGGTGGC CGGTGGAGAC TGCATAGGGA GCACGGTCTA CAGCAAACAC TGGCTCTTCG 181 GCGTCCTCAG CGGACTCATC CAGATTGTTA GCCCTGAAAA CACCAAATCT AGCTCAGATG 241 ATGAGGAGCA GCTGACGGAG CTTGATGAAG AAATGGAGAA TGAAATTTGC AGAGTATGGG 301 ATATGTCAAT GGATGAGGAC GTGGCTTTAT TTCTCCAAGA ATTTAATGCT CCTGATATAT 361 TCATGGGAGT ACTGGCCAAG TCCAAGTGTC CTCGATTAAG AGAAATCTGT GTGGGAATTT 421 TAGGTAATAT GGCCTGTTTC CAGGAGATAT GTGTGTCCAT CAGCAGTGAT AAAAATCTTG 481 GGCAGGTGTT ATTGCACTGT TTGTATGATT CAGACCCACC TACTCTGCTG GAAACAAGCA 541 GGTTGTTGCT TACTTGCCTT TCCCAGGCAG AAGTGGCCAG TGTTTGGGTT GAAAGGATCC 601 AGGAACATCC AGCTATTTAT GATAGCATTT GCTTCATTAT GTCAAGTTCA ACAAATGTTG 661 ACTTGCTGGT GAAGGTGGGG GAGGTTGTGG ACAAGCTCTT TGATTTGGAT GAGAAACTAA 721 TGTTAGAATG GGTCAGAAAT GGGGCTGCTC AGCCTCTGGA CCAACCCCAG GAAGAGTCTG 781 AAGAGCAGCC AGTGTTTCGG CTTGTGCCCT GTATACTTGA AGCTGCCAAA CAAGTACGTT 841 CTGAAAATCC AGAATGGCTT GATGTTTACA TGCACATTTT ACAACTGCTT ACTACAGTGG 901 ATGATGGAAT TCAAGCAATT GTACATTGTC CTGACACTGG AAAAGACATT TGGAATTTAC 961 TTTTTGACCT GGTCTGCCAT GAATTCTGCC AGTCTGATGA TCCACCCATC ATTCTTCAAG 1021 AACAGAAAAC GGTGCTAGCC TCTGTTTTTT CAGTGTTGTC TGCCATCTAT GCCTCACAGA 1081 CTGAGCAAGA GTATCTAAAG ATAGAAAAAG TAGATCTTCC TCTAATTGAC AGCCTCATTC 1141 GGGTCTTACA AAATATGGAA CAGTGTCAGA AAAAACCAGA GAACTCGGCA GAGTCTAACA 1201 CAGAGGAAAC TAAAAGGACT GATTTAACCC AAGATGATTT CCACTTGAAA ATCTTAAAGG 1261 ATATTTTATG TGAATTTCTT TCTAATATTT TTCAGGCATT AACAAAGGAG ACGGTGGCTC 1321 AGGGAGTAAA GGAAGGCCAG TTGAGCAAAC AGAAGTGTTC CTCTGCATTT CAAAACCTTC 1381 TTCCTTTCTA TAGCCCTGTG GTGGAAGATT TTATTAAAAT CCTACGTGAA GTTGATAAGG 1441 CGCTTGCTGA TGACTTGGAA AAAAACTTCC CAAGTTTGAA GGTTCAGACT TACCCAACTT 1501 TCTTGTACAA AGTTGGcatt ataagaaagc attgcttatc aatttgttgc aacgaac