Construct: ORF ccsbBroadEn_13205
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006487.1_s300c1, BRDN0000455512
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC01620 (140834)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 140834 | LINC01620 | long intergenic non-protein... | NR_132342.1 | 74.6% | 1_12del;14_15insG;576_753del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 633
- ORF length:
- 564
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGGCTAGCA CACCAACACC ATCCCCCCAG ATGCTTCAGT TGTTGGCTTC 121 GAATGGCTTA CTATTTCCAT TTCTACGGAG AACTGCCATC TCAGGAATCA CCTCACCCTG 181 GAGTTTATTC CCCTCACCCA CAGGGTGGCT GGCAGCCAAC AGCTGACTCG TACAGAGAGT 241 GGCACAATGA AGATTTGAAC CCACGTATGT CTCACTGGAC GTATGCCCAG GAACTGGTAA 301 GCTATAAAAA GACCTCCTTT ATTGTCTGGA GACATAGAAT TAGTCCAAAC GGTGTCACCT 361 CCAGGAAGCC TTACTGTCAC TTCCATGGAG GACAGTGGCC TGGGCCCACA CCACCCTCCT 421 GCCTGTCTTC AGCCTTTGCT AGTGGATCCT TTTCCCACTT CGAAGACTCC CCTTACATCC 481 TCCTCCATGT TGTCCTCCAA ATGTGCTGGC TGAGAGCCCA GCGCCTGAAT CAGAGGGACC 541 TGGGTTTGAA TCCCACCTCT GCCATTGAAC ACCAGCTGTC TGACCTTGAC TGCGTTCCTT 601 TGCTTCTCTG GGCTTCAGAT TCCCCATCTG AATTGCCAAC TTTCTTGTAC AAAGTTGGca 661 ttataagaaa gcattgctta tcaatttgtt gcaacgaac