Construct: ORF ccsbBroadEn_13221
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010919.1_s300c1, BRDN0000393898
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OVOS2 (144203)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 728715 | LOC728715 | ovostatin homolog 2 | NR_144634.1 | 25.1% | (many diffs) | |
| 2 | human | 144203 | OVOS2 | alpha-2-macroglobulin like ... | NR_153414.1 | 4.6% | (many diffs) | |
| 3 | human | 408186 | OVOS | alpha-2-macroglobulin like ... | NR_153413.1 | 4.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 351
- ORF length:
- 285
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT GGTTATAGAT GTAAAAATGC TATCAGGATT TACTCCAACC ATGTCATCCA 121 TTGAAGAGCT TGAAAACAAG GGCCAAGTGA TGAAGACTGA AGTCAAGAAT GACCATGTTC 181 TTTTCTACTT GGAAAATGTT TTTGGTCGAG CAGACAGTTT CACTTTTTCT GTTGAGCAGA 241 GCAACCTTGT GTTCAACATT CAGCCAGCCC CAGGCATGGT CTACGATTAC TACGAAAAAG 301 AAGAATATGC CCTAGCTTTT TACCACATCA ACAGTAGTTC AGTTTCCGAG TGCCCAACTT 361 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac