Construct: ORF ccsbBroadEn_13331
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005580.1_s300c1, BRDN0000456962
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF114 (163071)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 163071 | ZNF114 | zinc finger protein 114 | NM_001331097.1 | 91.7% | 91.8% | 1_102del;219A>G |
| 2 | human | 163071 | ZNF114 | zinc finger protein 114 | NM_001369811.1 | 91.7% | 91.8% | 1_102del;219A>G |
| 3 | human | 163071 | ZNF114 | zinc finger protein 114 | NM_001369812.1 | 91.7% | 91.8% | 1_102del;219A>G |
| 4 | human | 163071 | ZNF114 | zinc finger protein 114 | NM_153608.4 | 91.7% | 91.8% | 1_102del;219A>G |
| 5 | human | 163071 | ZNF114 | zinc finger protein 114 | NM_001331098.1 | 82.6% | 82.7% | 1_240del;357A>G |
| 6 | human | 163071 | ZNF114 | zinc finger protein 114 | XM_017026414.2 | 82.6% | 82.7% | 1_240del;357A>G |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1218
- ORF length:
- 1149
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCTGGAAAAT TCTAGGAACT TGGCATTCAT AGATTGGGCA ACTCCATGTA 121 AAACCAAAGA CGCAACCCCT CAGCCGGATA TTCTTCCTAA AAGAACATTT CCTGAAGCCA 181 ACAGGGTGTG TCTCACGAGC ATCAGTTCCC AGCACTCCAC ATTAAGAGAA GACTGGAGAT 241 GCCCCAAAAC AGAGGAACCA CACAGGCAGG GGGTGAATAA TGTGAAGCCA CCTGCAGTTG 301 CCCCTGAGAA AGATGAATCT CCTGTTAGCA TTTGTGAAGA TCATGAAATG AGGAACCACT 361 CTAAACCTAC CTGCAGGCTT GTGCCTTCAC AGGGAGATTC CATAAGACAA TGTATCCTAA 421 CACGTGACTC AAGTATTTTC AAGTATAATC CTGTCTTAAA CGATAGTCAA AAAACACATG 481 AAAACAACGA AGACGATGGA GTCTTGGGGT GGAACATTCA GTGGGTTCCG TGTGGGAGAA 541 AAACAGAGCT GAAATCAAGC ACATGGACTG GCAGTCAGAA CACTGTGCAT CATATACGTG 601 ATGAAATTGA TACGGGGGCC AACAGGCACC AGCGGAATCC ATTTGGAAAA GCTTTCCGTG 661 AAGACGGATC CCTTAGGGCA CACAACACTC ATGGTCGAGA GAAAATGTAT GATTTTACTC 721 AGTGCGAGAA CACCTCCAGA AATAACTCAA TTCACGCCAT GCAGATGCAG TTGTATACCG 781 CAGAGACAAA CAAGAAGGAT TGTCAAACTG GGGCAACCTC TGCCAACGCT CCAAATTCCG 841 GTTCACACAA GAGTCATTGC ACTGGAGAGA AAACCCATAA ATGCCCCGAA TGTGGGAGAG 901 CCTTTTTTTA TCAGTCATTC CTTATGAGAC ATATGAAAAT TCACACTGGA GAGAAACCGT 961 ATGAATGTGG GAAATGTGGG AAAGCCTTTA GATATTCCTT ACACCTTAAT AAACATTTAA 1021 GAAAGCATGT TGTGCAGAAG AAGCCCTACG AATGTGAAGA ATGTGGGAAA GTCATTCGGG 1081 AGTCCTCAAA ATATACACAT ATAAGGAGCC ACACTGGAGA GAAACCCTAT AAATGTAAGA 1141 CATGTGGAAA AGACTTTGCA AAGTCGTCAG GACTTAAAAA ACATCTTAAG ACTCACAAAG 1201 ATGAGAAGCC CTGTGAATTG CCAACTTTCT TGTACAAAGT TGGcattata agaaagcatt 1261 gcttatcaat ttgttgcaac gaac