Construct: ORF ccsbBroadEn_13493
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002782.1_s300c1, BRDN0000395831
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C10orf126 (283080)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 105379273 | LOC105379273 | uncharacterized LOC105379273 | XR_002958840.1 | 18% | (many diffs) | |
| 2 | human | 554279 | LINC00862 | long intergenic non-protein... | NR_040064.1 | 5.6% | (many diffs) | |
| 3 | human | 283080 | C10orf126 | chromosome 10 open reading ... | NR_164114.1 | 4.6% | 1_58del;138A>G;161_2149del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 168
- ORF length:
- 102
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG CCTCTTTCTG TCGCCCAGGC TGGAGTGCAA TGGTGTGATC ATAGCTCACT 121 GCAGCCTCAA CCTCCTGAGC TCAAGTAGTC CTCCTGCCTC AGCTTCCTGC CCAACTTTCT 181 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac