Construct: ORF ccsbBroadEn_13509
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004372.1_s300c1, BRDN0000387588
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC00469 (283982)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 283982 | LINC00469 | long intergenic non-protein... | NR_027146.1 | 21.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 420
- ORF length:
- 351
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GACGTCATCA GCACCCACCC TCCCAGATGT GACAATCAGA AATGTGTCCA 121 GACATATCCA GATGTCCCTT ATGGGGAAGG GAGAATCGCC CTGGCTTTGC AGACTCCAGC 181 TGGAACCCCT GCTGCAAGCG ATGGAGGAGC AACAGCTCGG CAATCTGGAG GCAAGGTGGG 241 AGGTGGAGAA GCACGGAAAC GAAGTCTCTG GCTCAACCAG CAAAAGTGAA CCACTCCCCA 301 GGTATTACCT TTATAATCAG ACAGAGCTTC AGGGAGCCCT GTGGAGTGGG CAGCATCCCC 361 CAGAGGGCCA AGGGGAGATA TTCCAGACAG TCTTCCAGCA GAGAAGTTTG GGAAGATGCT 421 TGCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 481 acgaac