Construct: ORF ccsbBroadEn_13527
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017109.1_s300c1, BRDN0000457394
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TPRX1 (284355)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 284355 | TPRX1 | tetrapeptide repeat homeobox 1 | NM_198479.2 | 98.9% | 98.7% | 603_614del;986C>T |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1290
- ORF length:
- 1221
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCTCAGCCTC AGGGAGCAAC AGCTGCAGGT GTGGTTCAAG AATCGCCGCG 121 CCAAACTAGC TCGGGAGCGG CGGCTCCAGC AGCAGCCCCA GCGCGTCCCT GGGCAGAGAG 181 GCCGAGGAGC CCGCGCTGCG CCCCTAGTCC CTGCAGCCTC TGCCTCCGCA CCTCAGCGGG 241 GCCCCTCGGG AATCCTTCCA GCGGCGGAAC CCACGATCTG CAGCCTCCAC CAGGCCTGGG 301 GTGGCCCTGG GTGCAGAGCC CAGAAGGGCA TCCCAGCTGC CCTGAGTCCA GGCCCTGGCC 361 CGATCCCTGC CCCAATCCCA GGCCCAGCCC AGATCCCAGG CCCACTCCCT GGCTCAATTC 421 CAGGCCCAAT TCCAGGCCCA GCTCAGATCC CAAGCCCGAT CCCAGCCCCA ATCCCAGGCC 481 CAATTTCAGG CCCAGTCCAG ATCCCAGGCC CATTCCGTGG CCCAATCCCA GGCCCAATTT 541 CAGGCCCAGC CCCGATCCCA GGCCCAATCT CAGGCCCATT CTCAGGCCCA AACCCAGGCC 601 CGATCCCAGG CCCAAACCCA GGCCCGATCC CAGGCCCAAT CTCAGGCCCG ATCCCAGGCC 661 CAATCTCAGT CCCGATCCCA GGCCCAATCT CAGGCCCAAT CTCAGGCCCA AACCCAGGCC 721 CGATCCCAGG CCCAATCCCA GGCCCAATCT CAGGCCCGAA CCCAGGCCCG ATCCCAGGCC 781 CAATCTCAGG CCCGAACCCA GGCCTGATCC CAGGCCCAAT CCCAGGCCCA ATCTCAGGCC 841 CAGGCCCAAT TATAGGCCCG ATTCCCAGCC CAGCCCAGAT CCCAGGCCCA GGCAGACTCC 901 AAGGCCCAGG TCCCATCTTA AGTCCTGGCC GGATGCGAAG CCCTGGCTCA CTTCCAGGCC 961 TAGCCCCGAT TTTAGGCCCA GGCTCAGGCC CAGGCTCAGG CTCAGTCCCA GCTCCAATCC 1021 CAGGCCCAGG ATCACTCCCA GTCCCAGCCC CCTTATGGCC TCAGAGCCCC GATGCCTCCG 1081 ACTTCTTGCC AGACACCCAG TTATTCCCTC ACTTCACAGA GCTGCTCCTA CCCCTAGACC 1141 CCTTGGAGGG ATCCTCAGTC TCCACCATGA CCTCTCAGTA CCAAGAAGGG GATGACTCTA 1201 TGGGCAAAAA ACACTCAGGG TCTCAGCCCC AAGAGGAGGG TGGCTCTGTG AATGAAAATC 1261 ACTCAGGCCC CAGGTTATTA CTGGATTTAT TGCCAACTTT CTTGTACAAA GTTGGcatta 1321 taagaaagca ttgcttatca atttgttgca acgaac