Construct: ORF ccsbBroadEn_13537
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001917.1_s300c1, BRDN0000393380
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LOC284912 (284912)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 284912 | LOC284912 | uncharacterized LOC284912 | XR_001755514.1 | 16.4% | (many diffs) | |
| 2 | human | 284912 | LOC284912 | uncharacterized LOC284912 | XR_938217.2 | 11.8% | (many diffs) | |
| 3 | human | 284912 | LOC284912 | uncharacterized LOC284912 | XR_001755513.1 | 10.9% | 1_679del;705_784del;868_869ins131 | |
| 4 | human | 284912 | LOC284912 | uncharacterized LOC284912 | XR_938215.2 | 9.9% | (many diffs) | |
| 5 | human | 284912 | LOC284912 | uncharacterized LOC284912 | XR_938216.2 | 9.2% | 1_862del;888_967del;1051_1052ins131 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 306
- ORF length:
- 240
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA ACTTCTCAGC CCACAATCAC CCTTCAGGGT AGACCGAGGA GAGCACCTCC 121 CCTTCCTGGT GAAGGGAGCC CGATACACGC TGGTGCCGGC TGGCCAAGAA GGAGGTGGAC 181 AAACCTGGCG ACCGCTCCCT GGCACCACCT CACCAGAGGA CAGCTCACAC CTCCACAGGG 241 GTCAGAAGAA AGGAGCTGCC CTGGGGATGG CTGTGTATCC CTACAACTGC CAGGCACATG 301 CCCCTTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 361 gttgcaacga ac