Construct: ORF ccsbBroadEn_13538
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002646.1_s300c1, BRDN0000388556
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RPL23AP82 (284942)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 118433 | RPL23AP7 | ribosomal protein L23a pseu... | NR_024531.1 | 23.8% | (many diffs) | |
| 2 | human | 118433 | RPL23AP7 | ribosomal protein L23a pseu... | NR_024530.1 | 23.7% | (many diffs) | |
| 3 | human | 101929828 | LOC101929828 | uncharacterized LOC101929828 | XR_430735.3 | 14.4% | (many diffs) | |
| 4 | human | 101929828 | LOC101929828 | uncharacterized LOC101929828 | XR_942193.2 | 14.4% | (many diffs) | |
| 5 | human | 101929828 | LOC101929828 | uncharacterized LOC101929828 | XR_254459.3 | 14.4% | (many diffs) | |
| 6 | human | 101929828 | LOC101929828 | uncharacterized LOC101929828 | XR_942194.2 | 14.4% | (many diffs) | |
| 7 | human | 101929828 | LOC101929828 | uncharacterized LOC101929828 | XR_254460.3 | 14.4% | (many diffs) | |
| 8 | human | 101929828 | LOC101929828 | uncharacterized LOC101929828 | XR_942195.2 | 14.4% | (many diffs) | |
| 9 | human | 101927506 | LOC101927506 | uncharacterized LOC101927506 | XR_001745752.2 | 11.8% | (many diffs) | |
| 10 | human | 101927506 | LOC101927506 | uncharacterized LOC101927506 | XR_001745753.2 | 11.3% | (many diffs) | |
| 11 | human | 101927506 | LOC101927506 | uncharacterized LOC101927506 | XR_001745755.2 | 11% | (many diffs) | |
| 12 | human | 101927506 | LOC101927506 | uncharacterized LOC101927506 | XR_001745754.2 | 10.9% | (many diffs) | |
| 13 | human | 101927506 | LOC101927506 | uncharacterized LOC101927506 | XR_001745751.2 | 10.5% | (many diffs) | |
| 14 | human | 284593 | FAM41C | family with sequence simila... | NR_027055.1 | 9.5% | (many diffs) | |
| 15 | human | 107987272 | LOC107987272 | uncharacterized LOC107987272 | XR_001754025.1 | 8.7% | (many diffs) | |
| 16 | human | 107985295 | LOC107985295 | uncharacterized LOC107985295 | XR_001753827.1 | 7.8% | (many diffs) | |
| 17 | human | 107985295 | LOC107985295 | uncharacterized LOC107985295 | XR_001753826.1 | 7.8% | (many diffs) | |
| 18 | human | 101927506 | LOC101927506 | uncharacterized LOC101927506 | XR_001745756.2 | 7.7% | (many diffs) | |
| 19 | human | 101930129 | LOC101930129 | uncharacterized LOC101930129 | XR_001748086.2 | 7.1% | (many diffs) | |
| 20 | human | 101930129 | LOC101930129 | uncharacterized LOC101930129 | XR_001748087.2 | 7.1% | (many diffs) | |
| 21 | human | 102723872 | LOC102723872 | uncharacterized LOC102723872 | XR_002956529.1 | 7% | (many diffs) | |
| 22 | human | 102723872 | LOC102723872 | uncharacterized LOC102723872 | XR_002956530.1 | 7% | (many diffs) | |
| 23 | human | 102723872 | LOC102723872 | uncharacterized LOC102723872 | XR_002956531.1 | 7% | (many diffs) | |
| 24 | human | 101927506 | LOC101927506 | uncharacterized LOC101927506 | XR_941341.3 | 6.6% | (many diffs) | |
| 25 | human | 102723872 | LOC102723872 | uncharacterized LOC102723872 | XR_002958929.1 | 6.3% | (many diffs) | |
| 26 | human | 102723872 | LOC102723872 | uncharacterized LOC102723872 | XR_002958930.1 | 6.3% | (many diffs) | |
| 27 | human | 102723872 | LOC102723872 | uncharacterized LOC102723872 | XR_002958931.1 | 6.3% | (many diffs) | |
| 28 | human | 105371423 | LINC02193 | long intergenic non-protein... | XR_001752318.2 | 4.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 255
- ORF length:
- 189
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT GGTGGCCTGG ACAGTGAAGG GAGAGAAGTG GATTTGGGAG ACATTTAGGA 121 GGAACAGTAA GAGGACCTTG TGCATGAATA ATTTGTTTCC ACACTACAGA AAGAATCCCA 181 GACTTCTTAG AGAACCCAGT GACTTTTTGC ACCTTAAATC TGTGAAATCC TCATGTTTTC 241 TTCTGCCGTA TCCATACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 301 tatcaatttg ttgcaacgaa c