Construct: ORF ccsbBroadEn_13638
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007993.1_s300c1, BRDN0000387964
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRRC10 (376132)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 376132 | LRRC10 | leucine rich repeat contain... | NM_201550.4 | 90.2% | 90.2% | 1_81del |
| 2 | mouse | 237560 | Lrrc10 | leucine rich repeat contain... | NM_146242.2 | 77.3% | 79.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 819
- ORF length:
- 750
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCCGCTGGAC AAGATGGTGG ATCTGAGTGG GAGCCAGTTA CGCCGCTTCC 121 CCCTGCACGT GTGCTCCTTC AGGGAGCTGG TCAAGCTCTA CCTGAGCGAC AACCACCTCA 181 ATAGCCTGCC TCCGGAGCTG GGGCAGCTAC AGAACCTGCA GATTCTGGCC TTGGATTTCA 241 ACAACTTCAA GGCTCTGCCC CAGGTGGTGT GCACCTTGAA ACAGCTCTGC ATCCTCTACC 301 TGGGCAACAA CAAACTCTGC GACCTCCCCA GTGAGCTGAG CCTGCTCCAG AACCTCAGGA 361 CCCTGTGGAT CGAGGCCAAC TGCCTCACCC AGCTGCCGGA TGTGGTCTGT GAGCTGAGTC 421 TCCTTAAGAC TCTGCATGCC GGCTCCAACG CCCTGCGTTT GCTGCCAGGC CAGCTCCGGC 481 GCCTCCAGGA GCTGAGGACC ATCTGGCTCT CGGGCAACCG GCTAACTGAC TTTCCCACTG 541 TGCTGCTTCA CATGCCCTTC CTGGAGGTGA TTGATGTGGA CTGGAACAGC ATCCGTTACT 601 TCCCCAGCCT GGCGCACCTG TCAAGTCTGA AGCTGGTCAT CTATGACCAC AATCCTTGCA 661 GGAACGCACC CAAGGTGGCC AAAGGTGTGC GCCGTGTGGG GAGATGGGCA GAGGAGACGC 721 CAGAGCCCGA CCCTAGAAAA GCCAGGCGCT ATGCGTTGGT CAGAGAGGAA AGCCAGGAGC 781 TACAGGCACC AGTCCCTCTA CTTCCTCCTA CCAACTCCTT GCCAACTTTC TTGTACAAAG 841 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac