Construct: ORF ccsbBroadEn_13718
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002999.1_s300c1, BRDN0000393381
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ERICH1-AS1 (619343)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9228 | DLGAP2 | DLG associated protein 2 | NR_073397.2 | 30.2% | 1_285del;538_834del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 318
- ORF length:
- 252
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG GACTGCTCAG GTTTTGCCTG GCATTCTGCA GAAGCATTGC TGTATCTTAC 121 CAGACAGGAA TACAGGCCGT CTCCAAACTA TAGTCCTATT GGACTGGTGC ACCAAATATG 181 GATTTGGGGT GTGCGTAATT CAGTCCATAG CACCCACCAA ACCACAGAAG CTGCCCCGAG 241 CTGATGTCCC GCTATCGGTG CGGCTGCAGG ACACTGTCCC ATTGCTGCAT GGAGCCTCTC 301 GCTGTCTGAG CCTCACCTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 361 gcttatcaat ttgttgcaac gaac