Construct: ORF ccsbBroadEn_13721
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012642.1_s300c1, BRDN0000384965
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LOC643406 (643406)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 643406 | LOC643406 | uncharacterized LOC643406 | NR_029405.1 | 7.6% | (many diffs) | |
| 2 | human | 149837 | LINC00654 | long intergenic non-protein... | NR_015406.2 | 4.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 360
- ORF length:
- 294
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC CGCCTTTGCA CTGTCCATGC TCTCAGCCCA CCACCTCCTC CCCCTGCCAT 121 TGCAGTGGCT AACACTGGAG ACGAAGACCA AGACACCACC GCCTTTCTCC AGTACCTCTC 181 AAATCAGCAC AGGCAAGGAC AAAGGCCTCA ATCCACAATT GCTGAAGATG GACCCTGGCC 241 ACATGGGATG GTCAGACACG CCTGCCCAGC TATCTGCAGG CGAAGAGGCT CAGAAGAGGT 301 TTAGGGGCCT GAAGGACATC TTGCTTCCAT GTCCATATGA GCAGGCTATT TCTGCTCCAT 361 GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 421 acgaac