Construct: ORF ccsbBroadEn_13725

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007010.1_s300c1, BRDN0000455193
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNRPD2P2 (645339)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6633 SNRPD2 small nuclear ribonucleopro... NM_001369751.1 38.4% 30.7% (many diffs)
2 human 6633 SNRPD2 small nuclear ribonucleopro... NM_177542.3 38.4% 30.7% (many diffs)
3 human 6633 SNRPD2 small nuclear ribonucleopro... NM_004597.6 35.3% 28.3% (many diffs)
4 human 645339 SNRPD2P2 small nuclear ribonucleopro... NR_033826.1 21.2% 1_410del;576_776del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
234
ORF length:
165
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGTGCTGGAG AATGTGAAGG AGATGTGTAC TGAGGTCCCC AAGGGGGGCA
121ACGGTGGCAA GGGCAAGAAG AAGTCCAAGC CAGCCAACAA AGACCACTTC ATCTCCAAGC
181TCTTCCTGTG CAGGGACTCA GTCATCACCA ACAAGTGGGG GCCACCTCCC CATTTGCCAA
241CTTTCTTGTA CAAAGTTGGc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)