Construct: ORF ccsbBroadEn_13731
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006875.1_s300c1, BRDN0000455208
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRRC37A5P (652972)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 652972 | LRRC37A5P | leucine rich repeat contain... | NR_034087.1 | 26.3% | (many diffs) | |
| 2 | human | 387646 | LRRC37A6P | leucine rich repeat contain... | NR_003525.2 | 3.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 363
- ORF length:
- 294
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACATAAAAG 61 TTGGCACCAT GCTGCAGTAC TTGCTTATAG ATTGGATTGT AGGTGACCAG TTTGAAATTC 121 AGCTAAACCA GCAGCTATGG TCCCTCATCC CCAACAACAA TGTGAGAAGG CTTGTTTCTC 181 ATGTTATCCG GACCTTGAAG ACGGACTGCA CTGAGACCCA TTTGCAACTG GCCTGTGCCA 241 AGCTCATCTC TAGGACAGGC CTCCTAATGA AGCTTCTCAG TGAGCAGCAA GAATTGAGAA 301 CTGTATCAAT GACAGCATGG AAGCCCAGAT TGAACAGAAA GAGCAGAAGT CGAATGAGGT 361 CCTTGCCAAC TTTCTTGTAC AAAGTTGGca ttataagaaa gcattgctta tcaatttgtt 421 gcaacgaac