Construct: ORF ccsbBroadEn_13772
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018255.1_s300c1, BRDN0000393371
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 101927905 | LINC02449 | long intergenic non-protein... | NR_120455.1 | 14.3% | (many diffs) | |
| 2 | human | 101927905 | LINC02449 | long intergenic non-protein... | NR_120454.1 | 12% | (many diffs) | |
| 3 | human | 285407 | ALG1L9P | ALG1 like 9, pseudogene | NR_073386.1 | 7% | (many diffs) | |
| 4 | human | 619423 | FAM85A | family with sequence simila... | NR_146925.1 | 6.2% | (many diffs) | |
| 5 | human | 112268389 | LOC112268389 | uncharacterized LOC112268389 | XR_002959144.1 | 3.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 186
- ORF length:
- 120
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC GTGGGAGATG ATGGCTGTGC TCTCGGAGAG TGTGACTGAG CCTCCCGAGG 121 GCTGCACCAA GAGAGGGCGA GAGAGTCAGT CCAGCAATCA GAAGGCAAGT GGCTTAGAAG 181 ACAAGTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 241 gttgcaacga ac