Construct: ORF ccsbBroadEn_13773
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004667.1_s300c1, BRDN0000393372
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 101927129 | LINC01580 | long intergenic non-protein... | NR_120322.1 | 17.1% | 1_326del;459_771del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 198
- ORF length:
- 132
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA TAATGGAAAG ATCTACGGCA AGGCTGGCTG TCTGCCCTGT CTAAGGAGGA 121 CGTACTGGAC CATCCTGCTC TGCACATCCA GATGTGTCCA TGAATACATC CATAAAACGA 181 TGGCCTGTGG AATCCTATAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 241 gcttatcaat ttgttgcaac gaac