Construct: ORF ccsbBroadEn_13776
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009602.1_s300c1, BRDN0000393389
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9765 | ZFYVE16 | zinc finger FYVE-type conta... | XR_002956199.1 | 1.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 264
- ORF length:
- 198
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG GTCTCATTCT GTCACCCAGG CTGGAGTGCA GCAGTGCCAT CTCAGCTCAC 121 TGCAACCTCC ACCTCTACGC TCAAGCAATC CTCCCACCTC AGCCTCCCAA GTAGCTGAGA 181 CCACAGGCAC GCACCACCAC ACCTGGCTAA TTTTTTGTGA TTTTGGTAGA GACAGGGTTT 241 CGCCATGTTG CCCAGGCTGG TCTTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa 301 agcattgctt atcaatttgt tgcaacgaac