Construct: ORF ccsbBroadEn_13947
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002754.1_s300c1, BRDN0000456038
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RPL38 (6169)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6169 | RPL38 | ribosomal protein L38 | NM_000999.4 | 100% | 100% | |
| 2 | human | 6169 | RPL38 | ribosomal protein L38 | NM_001035258.2 | 100% | 100% | |
| 3 | mouse | 67671 | Rpl38 | ribosomal protein L38 | NM_001048057.1 | 89.5% | 98.5% | (many diffs) |
| 4 | mouse | 67671 | Rpl38 | ribosomal protein L38 | NM_001048058.1 | 89.5% | 98.5% | (many diffs) |
| 5 | mouse | 67671 | Rpl38 | ribosomal protein L38 | NM_023372.2 | 89.5% | 98.5% | (many diffs) |
| 6 | mouse | 67671 | Rpl38 | ribosomal protein L38 | XM_006534009.2 | 89.5% | 98.5% | (many diffs) |
| 7 | mouse | 67671 | Rpl38 | ribosomal protein L38 | XM_017314720.1 | 89.5% | 98.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 67
- ORF end:
- 277
- ORF length:
- 210
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TNCAAAAAAG 61 TTGGCCATGC CTCGGAAAAT TGAGGAAATC AAGGACTTCC TGCTCACAGC CCGACGAAAG 121 GATGCCAAAT CTGTCAAGAT CAAGAAAAAT AAGGACAACG TGAAGTTTAA AGTTCGATGC 181 AGCAGATACC TTTACACCCT GGTCATCACT GACAAAGAGA AGGCAGAGAA ACTGAAGCAG 241 TCCCTGCCCC CCGGTTTGGC AGTGAAGGAA CTGAaatgcc caactttctt gtacaaagtt 301 ggcattataa gaaagcattg cttatcaatt tgttgcaacg aac