Construct: ORF ccsbBroadEn_13995
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012805.1_s300c1, BRDN0000395891
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RANBP3 (8498)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8498 | RANBP3 | RAN binding protein 3 | NM_007320.3 | 77.1% | 65.8% | (many diffs) |
| 2 | human | 8498 | RANBP3 | RAN binding protein 3 | NM_001300865.2 | 76.1% | 64.9% | (many diffs) |
| 3 | human | 8498 | RANBP3 | RAN binding protein 3 | NM_007322.3 | 67.9% | 58.4% | (many diffs) |
| 4 | human | 8498 | RANBP3 | RAN binding protein 3 | NM_003624.3 | 67% | 57.6% | (many diffs) |
| 5 | human | 8498 | RANBP3 | RAN binding protein 3 | XM_006722928.1 | 34.6% | 26.3% | (many diffs) |
| 6 | human | 8498 | RANBP3 | RAN binding protein 3 | XM_006722929.1 | 34.6% | 26.3% | (many diffs) |
| 7 | human | 8498 | RANBP3 | RAN binding protein 3 | XM_011528392.1 | 34.6% | 26.3% | (many diffs) |
| 8 | human | 8498 | RANBP3 | RAN binding protein 3 | XM_011528393.2 | 34.6% | 26.3% | (many diffs) |
| 9 | human | 8498 | RANBP3 | RAN binding protein 3 | XM_011528394.1 | 34.6% | 26.3% | (many diffs) |
| 10 | human | 8498 | RANBP3 | RAN binding protein 3 | XM_024451749.1 | 34.6% | 26.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1257
- ORF length:
- 1191
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT GGACCTGGCG AACGAAGAAA AGCCTGCCAT TGCTCCGCCC GTCTTTGTGT 121 TTCAGAAGGA TAAAGGACAA AAGAGGTCAG CTGGCGGCTC CAGTCCTGAA GGCGGAGAAG 181 ATTCTGACAG AGAAGATGGA AATTACTGCC CTCCTGTCAA GCGAGAAAGA ACATCCTCTT 241 TAACCCAGTT CCCACCCTCA CAGTCAGAGG AAAGGAGCAG TGGCTTCCGG TTGAAGCCAC 301 CAACGCTGAT CCACGGCCAA GCCCCCAGCG CAGGTCTGCC AAGCCAGAAG CCCAAGGAGC 361 AGCAGCGGAG CGTGCTTCGC CCGGCAGTGT TACAAGCTCC GCAGCCAAAG GCGCTGTCCC 421 AGACTGTCCC CAGCAGTGGC ACCAACGGGG TCAGCCTCCC AGCAGACTGC ACGGGGGCAG 481 TGCCCGCAGC ATCCCCTGAC ACTGCTGCAT GGAGAAGTCC TTCCGAAGCT GCCGATGAGG 541 TGTGTGCACT TGAGGAGAAA GAGCCCCAGA AAAATGAGTC CAGCAATGCC TCTGAAGAGG 601 AAGCCTGTGA GAAAAAAGAC CCCGCCACAC AGCAAGCCTT TGTATTTGGG CAGAACTTGA 661 GGGACAGAGT TAAGCTGATA AATGAGAGCG TGGACGAAGC CGACATGGAG AATGCTGGAC 721 ACCCCAGCGC AGACACGCCA ACCGCAACGA ACTATTTCCT CCAGTATATC AGTTCCAGTT 781 TAGAGAACTC AACCAATAGT GCCGACGCCT CCAGCAACAA ATTTGTATTT GGCCAGAACA 841 TGAGCGAGCG AGTTTTGAGC CCCCCAAAAT TAAACGAGGT CAGTTCAGAT GCCAACAGGG 901 AAAATGCAGC TGCCGAGTCA GGGTCTGAGT CCTCGTCCCA GGAGGCCACC CCTGAGAAAG 961 AGTCCCTGGC TGAGTCGGCA GCCGCCTACA CCAAGGCAAC AGCGCGGAAG TGTTTGTTGG 1021 AAAAAGTGGA AGTCATCACC GGGGAGGAGG CGGAGAGCAA TGTGTTACAG ATGCAGTGCA 1081 AGCTGTTTGT CTTTGACAAG ACCTCACAGT CCTGGCTTCT CCGCCACCCA CACCCTTCCC 1141 ACCCTGCTGT GGGGCCCTGC CTTTGTGGGG AGCAGCCAGC CCTCTGCCCC TGCCCAGGGC 1201 TCCCCAACTA TAGGCCTGGG ACCCCCGCCC AGCTTGGGGG GCTGCTCGTA CGAGTGTACC 1261 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1321 aac