Construct: ORF ccsbBroadEn_14124
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007734.1_s300c1, BRDN0000396824
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF638 (27332)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 27332 | ZNF638 | zinc finger protein 638 | NM_001252613.1 | 41.3% | 40.5% | (many diffs) |
| 2 | human | 27332 | ZNF638 | zinc finger protein 638 | NM_001014972.2 | 40.8% | 40.1% | (many diffs) |
| 3 | human | 27332 | ZNF638 | zinc finger protein 638 | NM_001252612.1 | 40.8% | 40.1% | (many diffs) |
| 4 | human | 27332 | ZNF638 | zinc finger protein 638 | NM_014497.5 | 40.8% | 40.1% | (many diffs) |
| 5 | mouse | 18139 | Zfp638 | zinc finger protein 638 | XM_017321437.1 | 58.1% | 53.5% | (many diffs) |
| 6 | mouse | 18139 | Zfp638 | zinc finger protein 638 | NM_001166371.1 | 54.5% | 49.7% | (many diffs) |
| 7 | mouse | 18139 | Zfp638 | zinc finger protein 638 | XM_006505712.3 | 51.9% | 47.8% | (many diffs) |
| 8 | mouse | 18139 | Zfp638 | zinc finger protein 638 | XM_017321435.1 | 51.5% | 47% | (many diffs) |
| 9 | mouse | 18139 | Zfp638 | zinc finger protein 638 | XM_006505711.3 | 50.6% | 46.6% | (many diffs) |
| 10 | mouse | 18139 | Zfp638 | zinc finger protein 638 | XR_001785106.1 | 39.4% | (many diffs) | |
| 11 | mouse | 18139 | Zfp638 | zinc finger protein 638 | XM_017321433.1 | 37.1% | 33.8% | (many diffs) |
| 12 | mouse | 18139 | Zfp638 | zinc finger protein 638 | XM_006505710.3 | 36.4% | 33.2% | (many diffs) |
| 13 | mouse | 18139 | Zfp638 | zinc finger protein 638 | XM_017321432.1 | 36.4% | 33.2% | (many diffs) |
| 14 | mouse | 18139 | Zfp638 | zinc finger protein 638 | NM_008717.3 | 36% | 33.2% | (many diffs) |
| 15 | mouse | 18139 | Zfp638 | zinc finger protein 638 | XM_017321431.1 | 36% | 33.2% | (many diffs) |
| 16 | mouse | 18139 | Zfp638 | zinc finger protein 638 | XM_006505708.3 | 35.4% | 32.6% | (many diffs) |
| 17 | mouse | 18139 | Zfp638 | zinc finger protein 638 | XM_006505709.3 | 35.4% | 32.6% | (many diffs) |
| 18 | mouse | 18139 | Zfp638 | zinc finger protein 638 | XM_017321434.1 | 35.4% | 32.6% | (many diffs) |
| 19 | mouse | 18139 | Zfp638 | zinc finger protein 638 | XM_017321430.1 | 35.3% | 32.1% | (many diffs) |
| 20 | mouse | 18139 | Zfp638 | zinc finger protein 638 | XM_011241247.2 | 34.8% | 32.3% | (many diffs) |
| 21 | mouse | 18139 | Zfp638 | zinc finger protein 638 | XM_017321429.1 | 34.7% | 31.7% | (many diffs) |
| 22 | mouse | 18139 | Zfp638 | zinc finger protein 638 | XM_006505707.3 | 34.7% | 31.6% | (many diffs) |
| 23 | mouse | 18139 | Zfp638 | zinc finger protein 638 | XM_006505706.3 | 34.3% | 31.6% | (many diffs) |
| 24 | mouse | 18139 | Zfp638 | zinc finger protein 638 | XM_006505705.3 | 34.1% | 31.1% | (many diffs) |
| 25 | mouse | 18139 | Zfp638 | zinc finger protein 638 | XM_006505704.3 | 33.8% | 31.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2508
- ORF length:
- 2442
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC GAGACCCAGG TTTAATCCTC GAGGAGACTT TCCACTTCAA AGGCCACGAG 121 CACCTAACCC TTCTGGGATG AGGCCTCCAG GACCATTTAT GAGGCCTGGA TCTATGGGTC 181 TCCCAAGATT TTACCCAGCA GGGAGAGCAC GTGGAATTCC ACACAGATTT GCTGGCCATG 241 AATCTTATCA GAACATGGGG CCACAGAGAA TGAATGTTCA GGTAACTCAA CACAGAACTG 301 ATCCAAGATT GACCAAAGAA AAACTGGATT TTCATGAAGC ACAACAGAAG AAGGGGAAGC 361 CTCATGGTAG CCGGTGGGAT GATGAGCCTC ATATATCTGC ATCAGTGGCA GTGAAACAGA 421 GTTCTGTAAC ACAGGTTACA GAGCAGAGTC CCAAAGTACA GAGCCGCTAT ACAAAAGAGA 481 GTGCCTCAAG TATCTTAGCA AGTTTTGGAT TATCTAATGA AGACCTAGAA GAACTTAGTC 541 GCTATCCTGA TGAACAACTA ACTCCTGAAA ATATGCCATT AATTTTGAGG GATATAAGTA 601 TGCGAAAAAT GGGGCGCCGA TTACCTAATT TACCTTCTCA GAGCAGAAAT AAAGAAACAC 661 TTGGTAGTGA AGCAGTTTCA AGTAATGTGA TCGATTATGG GCATGCAAGC AAATATGGCT 721 ACACAGAAGA TCCACTTGAA GTACGTATTT ATGATCCTGA AATTCCAACT GATGAGGTCG 781 AGAATGAATT TCAGTCACAG CAGAACATTT CTGCATCTGT TCCCAATCCA AATGTGATAT 841 GTAATTCTAT GTTTCCTGTT GAAGACGTAT TTCGCCAAAT GGACTTCCCC GGTGAGTCCT 901 CCAATAATCG GTCCTTTTTC TCAGTTGAGA GTGGAACCAA GATGTCAGGC TTACACATTT 961 CAGGAGGACA GTCAGTCCTT GAACCCATAA AATCCGTCAA CCAATCCATT AACCAAACAG 1021 TTAGCCAGAC AATGAGTCAA TCTCTGATTC CTCCATCTAT GAACCAGCAA CCTTTTTCGT 1081 CGGAATTAAT TTCATCTGTA AGCCAGCAAG AGCGGATCCC ACATGAACCT GTGATTAATT 1141 CATCTAACGT ACATGTTGGA TCAAGAGGAA GTAAAAAGAA TTACCAGTCA CAGGCTGACA 1201 TTCCCATTCG GTCTCCCTTT GGTATTGTGA AAGCATCCTG GCTACCAAAG TTTTCACATG 1261 CTGATGCCCA GAAGATGAAG AGACTTCCAA CTCCTTCTAT GATGAATGAT TATTATGCAG 1321 CATCTCCAAG AATATTTCCA CATTTGTGTT CTCTGTGTAA CGTAGAATGT AGTCATTTGA 1381 AGGATTGGAT TCAGCATCAA AATACATCTA CTCATATTGA GAGCTGTCGA CAGTTACGTC 1441 AACAGTATCC TGATTGGAAT CCTGAGATCC TCCCATCGAG AAGAAATGAG GGCAATAGAA 1501 AAGAAAATGA AACTCCACGA AGACGTTCTC ATTCCCCCAG TCCTAGGCGT TCTAGAAGAT 1561 CAAGCTCAAG TCACAGATTC CGTCGGTCTC GAAGCCCAAT GCATTACATG TATAGGCCGA 1621 GAAGTCGAAG TCCAAGAATT TGCCATCGTT TCATTTCTAG ATACAGATCC AGATCCAGAT 1681 CCCGTTCACC ATATCGAATT AGAAATCCAT TTAGAGGTAG TCCAAAATGC TTTCGATCAG 1741 TTAGCCCTGA GAGGATGTCA AGGAGATCAG TGAGATCATC AGATAGAAAA AAAGCATTAG 1801 AAGATGTAGT ACAACGATCT GGGCATGGGA CAGAATTTAA TAAACAGAAG CATCTTGAAG 1861 CTGCTGATAA GGGACATTCA CCAGCACAAA AGCCTAAAAC TAGCAGTGGA ACAAAACCAT 1921 CAGTTAAACC TACAAGCGCT ACAAAGAGTG ATTCAAATCT AGGAGGACAT TCTATTCGTT 1981 GTAAATCAAA GAATCTTGAA GATGACACTT TGTCAGAATG TAAACAGGTG TCTGATAAAG 2041 CTGTTTCTCT CCAGCGAAAG CTTCGGAAAG AACAGTCATT GCATTATGGT TCGGTTCTTC 2101 TTATAACTGA ATTACCAGAG GATGGTTGTA CTGAAGAAGA TGTGAGAAAA TTATTTCAAC 2161 CATTTGGGAA AGTGAATGAT GTCCTAATTG TTCCATATAG AAAAGAGGCT TACCTAGAAA 2221 TGGAATTTAA AGAGGCAATT ACTGCAATTA TGAAGTACAT TGAAACAACA CCTCTTACGA 2281 TAAAAGGAAA AAGTGTGAAA ATATGTGTTC CAGGAAAGAA AAAAGCACAG AACAAAGAGG 2341 TGAAGAAAAA GACTTTAGAG TCAAAGAAAG TATCTGCATC TACCTTAAAA AGAGATGCAG 2401 ATGCTTCAAA AGCTGTTGAA ATTGTTACTT CAACTTCTGC TGGACTGCTC CCTACAGGCG 2461 GGGGCAACAA TTACCCACAG ATTGTGTTGG CTCCAGGCCT TTGTCATTAC CCAACTTTCT 2521 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac