Construct: ORF ccsbBroadEn_14124

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007734.1_s300c1, BRDN0000396824
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF638 (27332)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27332 ZNF638 zinc finger protein 638 NM_001252613.1 41.3% 40.5% (many diffs)
2 human 27332 ZNF638 zinc finger protein 638 NM_001014972.2 40.8% 40.1% (many diffs)
3 human 27332 ZNF638 zinc finger protein 638 NM_001252612.1 40.8% 40.1% (many diffs)
4 human 27332 ZNF638 zinc finger protein 638 NM_014497.5 40.8% 40.1% (many diffs)
5 mouse 18139 Zfp638 zinc finger protein 638 XM_017321437.1 58.1% 53.5% (many diffs)
6 mouse 18139 Zfp638 zinc finger protein 638 NM_001166371.1 54.5% 49.7% (many diffs)
7 mouse 18139 Zfp638 zinc finger protein 638 XM_006505712.3 51.9% 47.8% (many diffs)
8 mouse 18139 Zfp638 zinc finger protein 638 XM_017321435.1 51.5% 47% (many diffs)
9 mouse 18139 Zfp638 zinc finger protein 638 XM_006505711.3 50.6% 46.6% (many diffs)
10 mouse 18139 Zfp638 zinc finger protein 638 XR_001785106.1 39.4% (many diffs)
11 mouse 18139 Zfp638 zinc finger protein 638 XM_017321433.1 37.1% 33.8% (many diffs)
12 mouse 18139 Zfp638 zinc finger protein 638 XM_006505710.3 36.4% 33.2% (many diffs)
13 mouse 18139 Zfp638 zinc finger protein 638 XM_017321432.1 36.4% 33.2% (many diffs)
14 mouse 18139 Zfp638 zinc finger protein 638 NM_008717.3 36% 33.2% (many diffs)
15 mouse 18139 Zfp638 zinc finger protein 638 XM_017321431.1 36% 33.2% (many diffs)
16 mouse 18139 Zfp638 zinc finger protein 638 XM_006505708.3 35.4% 32.6% (many diffs)
17 mouse 18139 Zfp638 zinc finger protein 638 XM_006505709.3 35.4% 32.6% (many diffs)
18 mouse 18139 Zfp638 zinc finger protein 638 XM_017321434.1 35.4% 32.6% (many diffs)
19 mouse 18139 Zfp638 zinc finger protein 638 XM_017321430.1 35.3% 32.1% (many diffs)
20 mouse 18139 Zfp638 zinc finger protein 638 XM_011241247.2 34.8% 32.3% (many diffs)
21 mouse 18139 Zfp638 zinc finger protein 638 XM_017321429.1 34.7% 31.7% (many diffs)
22 mouse 18139 Zfp638 zinc finger protein 638 XM_006505707.3 34.7% 31.6% (many diffs)
23 mouse 18139 Zfp638 zinc finger protein 638 XM_006505706.3 34.3% 31.6% (many diffs)
24 mouse 18139 Zfp638 zinc finger protein 638 XM_006505705.3 34.1% 31.1% (many diffs)
25 mouse 18139 Zfp638 zinc finger protein 638 XM_006505704.3 33.8% 31.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2508
ORF length:
2442
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC GAGACCCAGG TTTAATCCTC GAGGAGACTT TCCACTTCAA AGGCCACGAG
121CACCTAACCC TTCTGGGATG AGGCCTCCAG GACCATTTAT GAGGCCTGGA TCTATGGGTC
181TCCCAAGATT TTACCCAGCA GGGAGAGCAC GTGGAATTCC ACACAGATTT GCTGGCCATG
241AATCTTATCA GAACATGGGG CCACAGAGAA TGAATGTTCA GGTAACTCAA CACAGAACTG
301ATCCAAGATT GACCAAAGAA AAACTGGATT TTCATGAAGC ACAACAGAAG AAGGGGAAGC
361CTCATGGTAG CCGGTGGGAT GATGAGCCTC ATATATCTGC ATCAGTGGCA GTGAAACAGA
421GTTCTGTAAC ACAGGTTACA GAGCAGAGTC CCAAAGTACA GAGCCGCTAT ACAAAAGAGA
481GTGCCTCAAG TATCTTAGCA AGTTTTGGAT TATCTAATGA AGACCTAGAA GAACTTAGTC
541GCTATCCTGA TGAACAACTA ACTCCTGAAA ATATGCCATT AATTTTGAGG GATATAAGTA
601TGCGAAAAAT GGGGCGCCGA TTACCTAATT TACCTTCTCA GAGCAGAAAT AAAGAAACAC
661TTGGTAGTGA AGCAGTTTCA AGTAATGTGA TCGATTATGG GCATGCAAGC AAATATGGCT
721ACACAGAAGA TCCACTTGAA GTACGTATTT ATGATCCTGA AATTCCAACT GATGAGGTCG
781AGAATGAATT TCAGTCACAG CAGAACATTT CTGCATCTGT TCCCAATCCA AATGTGATAT
841GTAATTCTAT GTTTCCTGTT GAAGACGTAT TTCGCCAAAT GGACTTCCCC GGTGAGTCCT
901CCAATAATCG GTCCTTTTTC TCAGTTGAGA GTGGAACCAA GATGTCAGGC TTACACATTT
961CAGGAGGACA GTCAGTCCTT GAACCCATAA AATCCGTCAA CCAATCCATT AACCAAACAG
1021TTAGCCAGAC AATGAGTCAA TCTCTGATTC CTCCATCTAT GAACCAGCAA CCTTTTTCGT
1081CGGAATTAAT TTCATCTGTA AGCCAGCAAG AGCGGATCCC ACATGAACCT GTGATTAATT
1141CATCTAACGT ACATGTTGGA TCAAGAGGAA GTAAAAAGAA TTACCAGTCA CAGGCTGACA
1201TTCCCATTCG GTCTCCCTTT GGTATTGTGA AAGCATCCTG GCTACCAAAG TTTTCACATG
1261CTGATGCCCA GAAGATGAAG AGACTTCCAA CTCCTTCTAT GATGAATGAT TATTATGCAG
1321CATCTCCAAG AATATTTCCA CATTTGTGTT CTCTGTGTAA CGTAGAATGT AGTCATTTGA
1381AGGATTGGAT TCAGCATCAA AATACATCTA CTCATATTGA GAGCTGTCGA CAGTTACGTC
1441AACAGTATCC TGATTGGAAT CCTGAGATCC TCCCATCGAG AAGAAATGAG GGCAATAGAA
1501AAGAAAATGA AACTCCACGA AGACGTTCTC ATTCCCCCAG TCCTAGGCGT TCTAGAAGAT
1561CAAGCTCAAG TCACAGATTC CGTCGGTCTC GAAGCCCAAT GCATTACATG TATAGGCCGA
1621GAAGTCGAAG TCCAAGAATT TGCCATCGTT TCATTTCTAG ATACAGATCC AGATCCAGAT
1681CCCGTTCACC ATATCGAATT AGAAATCCAT TTAGAGGTAG TCCAAAATGC TTTCGATCAG
1741TTAGCCCTGA GAGGATGTCA AGGAGATCAG TGAGATCATC AGATAGAAAA AAAGCATTAG
1801AAGATGTAGT ACAACGATCT GGGCATGGGA CAGAATTTAA TAAACAGAAG CATCTTGAAG
1861CTGCTGATAA GGGACATTCA CCAGCACAAA AGCCTAAAAC TAGCAGTGGA ACAAAACCAT
1921CAGTTAAACC TACAAGCGCT ACAAAGAGTG ATTCAAATCT AGGAGGACAT TCTATTCGTT
1981GTAAATCAAA GAATCTTGAA GATGACACTT TGTCAGAATG TAAACAGGTG TCTGATAAAG
2041CTGTTTCTCT CCAGCGAAAG CTTCGGAAAG AACAGTCATT GCATTATGGT TCGGTTCTTC
2101TTATAACTGA ATTACCAGAG GATGGTTGTA CTGAAGAAGA TGTGAGAAAA TTATTTCAAC
2161CATTTGGGAA AGTGAATGAT GTCCTAATTG TTCCATATAG AAAAGAGGCT TACCTAGAAA
2221TGGAATTTAA AGAGGCAATT ACTGCAATTA TGAAGTACAT TGAAACAACA CCTCTTACGA
2281TAAAAGGAAA AAGTGTGAAA ATATGTGTTC CAGGAAAGAA AAAAGCACAG AACAAAGAGG
2341TGAAGAAAAA GACTTTAGAG TCAAAGAAAG TATCTGCATC TACCTTAAAA AGAGATGCAG
2401ATGCTTCAAA AGCTGTTGAA ATTGTTACTT CAACTTCTGC TGGACTGCTC CCTACAGGCG
2461GGGGCAACAA TTACCCACAG ATTGTGTTGG CTCCAGGCCT TTGTCATTAC CCAACTTTCT
2521TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)