Construct: ORF ccsbBroadEn_14208
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011413.1_s300c1, BRDN0000385271
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRIF1 (55791)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55791 | LRIF1 | ligand dependent nuclear re... | XM_011541768.1 | 58.6% | 58.6% | 1_918del;926C>G;2214G>A |
| 2 | human | 55791 | LRIF1 | ligand dependent nuclear re... | XM_017001768.1 | 58.5% | 58.4% | (many diffs) |
| 3 | human | 55791 | LRIF1 | ligand dependent nuclear re... | NM_018372.4 | 56.6% | 56.5% | 1_999del;1007C>G;2295G>A |
| 4 | human | 55791 | LRIF1 | ligand dependent nuclear re... | XM_005271029.4 | 56.4% | 56.4% | (many diffs) |
| 5 | human | 55791 | LRIF1 | ligand dependent nuclear re... | NM_001006945.1 | 53.3% | 53.4% | 0_1ins609;687G>A |
| 6 | human | 55791 | LRIF1 | ligand dependent nuclear re... | XM_017001769.2 | 38.7% | 37.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1374
- ORF length:
- 1308
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC ACGATTGAGT ACCATCGATC CTAGTGGGAC GCGATCCAAA AATATGCCTA 121 TTAAAGATAA TGCTTTGGTT ATGTTTAATG GGAAAGTCTA TCTGTTGGCT AAAAAGGGGA 181 CAGATGTTCT GCCATCACAA ATTGACCAAC AGAATTCTGT TTCTCCTGAT ACTCCAGTAA 241 GAAAAGACAC GTTACAGACA GTGAGTTCAA GTCCAGTCAC AGAAATATCC AGAGAGGTTG 301 TAAATATTGT TTTGGCTAAA AGTAAATCTT CCCAGATGGA GACAAAATCA CTTTCCAATA 361 CCCAGCTTGC TTCCATGGCC AATCTAAGGG CAGAGAAGAA TAAAGTGGAG AAACCATCTC 421 CTTCTACCAC AAATCCACAT ATGAACCAAT CCAGTAACTA CTTAAAACAG AGTAAGACTT 481 TATTCACAAA TCCAATCTTT CCAGTTGGAT TTAGTACAGG ACACAATGCC CCCAGAAAAG 541 TAACAGCCGT CATTTATGCT AGAAAAGGAA GTGTCCTCCA GAGCATAGAG AAAATAAGTT 601 CCTCTGTTGA TGCAACAACT GTTACTTCAC AACAGTGTGT TTTCAGAGAC CAAGAACCAA 661 AGATCCATAA TGAGATGGCA TCAACATCAG ATAAAGGTGC CCAAGGAAGA AATGACAAGA 721 AAGATTCTCA AGGAAGAAGT AATAAGGCAT TACATCTGAA GAGTGATGCT GAATTTAAAA 781 AGATATTTGG CCTTACTAAG GATTTGAGAG TGTGCCTTAC TCGAATTCCT GACCATTTGA 841 CCTCTGGAGA AGGTTTCGAT TCCTTTAGCA GTTTGGTAAA GAGTGGTACT TACAAAGAGA 901 CAGAGTTTAT GGTGAAGGAA GGAGAGAGAA AACAGCAGAA TTTTGATAAG AAAAGAAAAG 961 CAAAAACTAA TAAGAAGATG GATCACATAA AGAAGAGAAA AACAGAGAAT GCTTATAACG 1021 CAATCATAAA TGGGGAAGCT AATGTCACCG GTTCCCAACT CCTAAGCAGT ATTTTACCAA 1081 CTTCAGATGT GTCACAACAT AACATTCTCA CGAGTCACAG CAAAACCAGA CAAGAAAAGA 1141 GAACTGAGAT GGAATACTAT ACCCATGAGA AGCAAGAGAA AGGCACTTTG AATTCAAATG 1201 CAGCTTATGA ACAAAGTCAT TTCTTCAATA AAAATTATAC CGAAGATATT TTCCCAGTGA 1261 CACCACCGGA GTTAGAAGAA ACCATTCGAG ATGAAAAAAT AAGAAGACTT AAGCAGGTGC 1321 TGAGAGAGAA AGAAGCAGCT CTTGAAGAAA TGCGTAAGAA AATGCACCAA AAATACCCAA 1381 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac