Construct: ORF ccsbBroadEn_14208

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011413.1_s300c1, BRDN0000385271
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LRIF1 (55791)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55791 LRIF1 ligand dependent nuclear re... XM_011541768.1 58.6% 58.6% 1_918del;926C>G;2214G>A
2 human 55791 LRIF1 ligand dependent nuclear re... XM_017001768.1 58.5% 58.4% (many diffs)
3 human 55791 LRIF1 ligand dependent nuclear re... NM_018372.4 56.6% 56.5% 1_999del;1007C>G;2295G>A
4 human 55791 LRIF1 ligand dependent nuclear re... XM_005271029.4 56.4% 56.4% (many diffs)
5 human 55791 LRIF1 ligand dependent nuclear re... NM_001006945.1 53.3% 53.4% 0_1ins609;687G>A
6 human 55791 LRIF1 ligand dependent nuclear re... XM_017001769.2 38.7% 37.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1374
ORF length:
1308
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCC ACGATTGAGT ACCATCGATC CTAGTGGGAC GCGATCCAAA AATATGCCTA
121TTAAAGATAA TGCTTTGGTT ATGTTTAATG GGAAAGTCTA TCTGTTGGCT AAAAAGGGGA
181CAGATGTTCT GCCATCACAA ATTGACCAAC AGAATTCTGT TTCTCCTGAT ACTCCAGTAA
241GAAAAGACAC GTTACAGACA GTGAGTTCAA GTCCAGTCAC AGAAATATCC AGAGAGGTTG
301TAAATATTGT TTTGGCTAAA AGTAAATCTT CCCAGATGGA GACAAAATCA CTTTCCAATA
361CCCAGCTTGC TTCCATGGCC AATCTAAGGG CAGAGAAGAA TAAAGTGGAG AAACCATCTC
421CTTCTACCAC AAATCCACAT ATGAACCAAT CCAGTAACTA CTTAAAACAG AGTAAGACTT
481TATTCACAAA TCCAATCTTT CCAGTTGGAT TTAGTACAGG ACACAATGCC CCCAGAAAAG
541TAACAGCCGT CATTTATGCT AGAAAAGGAA GTGTCCTCCA GAGCATAGAG AAAATAAGTT
601CCTCTGTTGA TGCAACAACT GTTACTTCAC AACAGTGTGT TTTCAGAGAC CAAGAACCAA
661AGATCCATAA TGAGATGGCA TCAACATCAG ATAAAGGTGC CCAAGGAAGA AATGACAAGA
721AAGATTCTCA AGGAAGAAGT AATAAGGCAT TACATCTGAA GAGTGATGCT GAATTTAAAA
781AGATATTTGG CCTTACTAAG GATTTGAGAG TGTGCCTTAC TCGAATTCCT GACCATTTGA
841CCTCTGGAGA AGGTTTCGAT TCCTTTAGCA GTTTGGTAAA GAGTGGTACT TACAAAGAGA
901CAGAGTTTAT GGTGAAGGAA GGAGAGAGAA AACAGCAGAA TTTTGATAAG AAAAGAAAAG
961CAAAAACTAA TAAGAAGATG GATCACATAA AGAAGAGAAA AACAGAGAAT GCTTATAACG
1021CAATCATAAA TGGGGAAGCT AATGTCACCG GTTCCCAACT CCTAAGCAGT ATTTTACCAA
1081CTTCAGATGT GTCACAACAT AACATTCTCA CGAGTCACAG CAAAACCAGA CAAGAAAAGA
1141GAACTGAGAT GGAATACTAT ACCCATGAGA AGCAAGAGAA AGGCACTTTG AATTCAAATG
1201CAGCTTATGA ACAAAGTCAT TTCTTCAATA AAAATTATAC CGAAGATATT TTCCCAGTGA
1261CACCACCGGA GTTAGAAGAA ACCATTCGAG ATGAAAAAAT AAGAAGACTT AAGCAGGTGC
1321TGAGAGAGAA AGAAGCAGCT CTTGAAGAAA TGCGTAAGAA AATGCACCAA AAATACCCAA
1381CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)