Construct: ORF ccsbBroadEn_14463
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006771.1_s300c1, BRDN0000455255
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- LINC01270 (284751)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 284751 | LINC01270 | long intergenic non-protein... | NR_034124.1 | 13.8% | 1_29del;57_58insG;345_2278del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 70
- ORF end:
- 166
- ORF length:
- 96
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAACAAAA 61 GTTGGCACCA TGACACAGCA CTTTTGGGCA CAAGGCAGGG GCCCAGAGGG GTGCGTGGGG 121 GCCGCAGCCC AGCCCCCAAG CCCCGCCAGC GGCTTTACTG GGGTGTAACA AACACACGAT 181 AAACTGCGCA TATTCCAGTG TTCATGTGGA TGAGTTTGGA CATATGCACA CACTTCCGAA 241 ACCACCAGCA CAATCAAGAC AGCAGACATA TCCATCGCCC CCAAGGGTGT CCTTGTGTCT 301 TTTTGTCATT CATCCCTCCC GGCCGCCCCA TCCACACTCC CATCGCCTGC CGACTGTGGC 361 TGATCTGCTT TCTGCGGCTG TGGATTTGCC AACTTTCTTG TACAAAGTTG Gcattataag 421 aaagcattgc ttatcaattt gttgcaacga ac