Construct: ORF ccsbBroadEn_14510
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011180.1_s300c1, BRDN0000456140
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DNM1P33 (554175)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 101927579 | DNM1P50 | dynamin 1 pseudogene 50 | NR_145478.1 | 20.9% | (many diffs) | |
| 2 | human | 1759 | DNM1 | dynamin 1 | NM_001005336.3 | 9.9% | 8.5% | (many diffs) |
| 3 | human | 1759 | DNM1 | dynamin 1 | NM_001288737.2 | 9.9% | 8.5% | (many diffs) |
| 4 | human | 1759 | DNM1 | dynamin 1 | NM_001288738.2 | 9.9% | 8.5% | (many diffs) |
| 5 | human | 1759 | DNM1 | dynamin 1 | NM_001288739.2 | 9.7% | 8.4% | (many diffs) |
| 6 | human | 1759 | DNM1 | dynamin 1 | NM_004408.4 | 9.7% | 8.4% | (many diffs) |
| 7 | human | 1759 | DNM1 | dynamin 1 | NM_001374269.1 | 9.7% | 8.3% | (many diffs) |
| 8 | human | 100128285 | DNM1P35 | dynamin 1 pseudogene 35 | NR_024595.3 | 6.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 372
- ORF length:
- 306
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC TTCGTGCTCT CCACAGCAGG CCAGCAAGGC CGAGGAGAAT GGTTCCAACA 121 GCTTCATGCA CTCCATGGTC CCACAGCTGG AGTGGCAGAT GGAGACCACC CAGAGCCTGG 181 TGGACTCCTA TGTGGCCATT GTCAACAAGA CCGTGTGGGA CCTCATGGTT GGTCTCACAC 241 CCAAGACCAT CATGCACCTC ATGATCAACA ACAACAAGGA GTTTATCTTC TCGGAGCTGC 301 TGGCCAACCT GTACTTGCAT GGGGACAAGA ACATGCTGAT GGAGGAGTCG GCAGAGCAGG 361 CACAGTGGTC ATGCCCAACT TTCTTGTACA AAGTTGGcat tataagaaag cattgcttat 421 caatttgttg caacgaac