Construct: ORF ccsbBroadEn_14521
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004451.1_s300c1, BRDN0000388930
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 100423062 | IGLL5 | immunoglobulin lambda like ... | NM_001256296.2 | 53.5% | 47.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 771
- ORF length:
- 705
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CTNGGCTCNG CTGCTCCTCA CTCTCCTCAC TCAGGACACA GGGTCCTGGG 121 CCCAGTCTGC CCTGACTCAG CCTGCCTCCG TGTCTGGGTC TCCTGGACAG TCGATCACCA 181 TCTCCTGCAC TGGAACCAGC ACTGATGTTG GGAGTCATAG CCTTGTCTCC TGGTACCAAC 241 AGCACCCAGG CAAAGCCCCC AAATTTCTTA TTTTCGAGGG CAGTAAGCGG CCCTCAGGGG 301 TTTCGAATCG CTTCTCTGGC TCCAAGTCTG GCAACACGGC CTCCCTGACA ATCTCTGGGC 361 TCCAGGCTGA GGACGAGGCT GATTATTACT GCTGTTCATA TGTTGGTAGT GGCACTGTGG 421 TTTTCGGCGG AGGGACGAAG CTGACCGTCC TAGGTCAGCC CAAGGCTGCC CCCTCGGTCA 481 CTCTGTTCCC GCCCTCCTCT GAGGAGCTTC AAGCCAACAA GGCCACACTG GTGTGTCTCA 541 TAAGTGACTT CTACCCGGGA GCCGTGACAG TGGCCTGGAA GGCAGATAGC AGCCCCGTCA 601 AGGCGGGAGT GGAGACCACC ACACCCTCCA AACAAAGCAA CAACAAGTAC GCGGCCAGCA 661 GCTATCTGAG CCTGACGCCT GAGCAGTGGA AGTCCCACAG AAGCTACAGC TGCCAGGTCA 721 CGCATGAAGG GAGCACCGTG GAGAAGACAG TGGCCCCTAC AGAATGTTCA TACCCAACTT 781 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac