Construct: ORF ccsbBroadEn_14557

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019024.1_s300c1, BRDN0000458642
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DDR1 (780)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 780 DDR1 discoidin domain receptor t... NM_001297652.1 100% 100%
2 human 780 DDR1 discoidin domain receptor t... NM_001297653.1 100% 100%
3 human 780 DDR1 discoidin domain receptor t... NM_001954.4 100% 100%
4 human 780 DDR1 discoidin domain receptor t... XM_017011269.2 99.3% 99.3% 1883_1900del
5 human 780 DDR1 discoidin domain receptor t... NM_001202523.1 97.9% 97.9% 1_54del
6 human 780 DDR1 discoidin domain receptor t... XM_011514888.3 97.3% 97.3% 1_54del;1937_1954del
7 human 780 DDR1 discoidin domain receptor t... NM_001297654.1 95.9% 95.9% 1513_1623del
8 human 780 DDR1 discoidin domain receptor t... NM_013993.2 95.9% 95.9% 1513_1623del
9 human 780 DDR1 discoidin domain receptor t... NM_013994.2 95.3% 95.3% 1513_1623del;1994_2011del
10 human 780 DDR1 discoidin domain receptor t... XM_011514883.2 95.3% 95.3% 1513_1623del;1994_2011del
11 human 780 DDR1 discoidin domain receptor t... XM_011514884.1 95.3% 95.3% 1513_1623del;1994_2011del
12 human 780 DDR1 discoidin domain receptor t... XM_011514885.2 95.3% 95.3% 1513_1623del;1994_2011del
13 human 780 DDR1 discoidin domain receptor t... XM_011514886.2 95.3% 95.3% 1513_1623del;1994_2011del
14 human 780 DDR1 discoidin domain receptor t... XM_011514887.2 95.3% 95.3% 1513_1623del;1994_2011del
15 human 780 DDR1 discoidin domain receptor t... XM_017011268.2 95.3% 95.3% 1513_1623del;1994_2011del
16 human 780 DDR1 discoidin domain receptor t... XM_024446540.1 95.3% 95.3% 1513_1623del;1994_2011del
17 human 780 DDR1 discoidin domain receptor t... XM_024446541.1 95.3% 95.3% 1513_1623del;1994_2011del
18 human 780 DDR1 discoidin domain receptor t... XM_024446542.1 95.3% 95.3% 1513_1623del;1994_2011del
19 human 780 DDR1 discoidin domain receptor t... XM_006715185.2 94% 94% 1_54del;1567_1677del
20 human 780 DDR1 discoidin domain receptor t... XM_011514882.2 93.4% 93.4% 1_54del;1567_1677del;2048_2065del
21 human 780 DDR1 discoidin domain receptor t... NM_001202522.1 87.5% 85.8% 1345_1346ins82;1430_1431ins245
22 human 780 DDR1 discoidin domain receptor t... NM_001202521.1 57.6% 57.8% 1514_1518delGTGCA;1521_1522insACA;1524_1525ins1106
23 mouse 12305 Ddr1 discoidin domain receptor f... NM_172962.1 87% 93.1% (many diffs)
24 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523538.3 87% 93.1% (many diffs)
25 mouse 12305 Ddr1 discoidin domain receptor f... NM_001198831.1 83.5% 89.3% (many diffs)
26 mouse 12305 Ddr1 discoidin domain receptor f... NM_001198833.1 83.5% 89.3% (many diffs)
27 mouse 12305 Ddr1 discoidin domain receptor f... NM_007584.2 83.5% 89.3% (many diffs)
28 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523533.1 83.5% 89.3% (many diffs)
29 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523534.1 83.5% 89.3% (many diffs)
30 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523535.3 83.5% 89.3% (many diffs)
31 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523536.3 83.5% 89.3% (many diffs)
32 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523537.1 83.5% 89.3% (many diffs)
33 mouse 12305 Ddr1 discoidin domain receptor f... XM_011246259.1 83.5% 89.3% (many diffs)
34 mouse 12305 Ddr1 discoidin domain receptor f... XR_001782030.1 59% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2697
ORF length:
2628
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcaccat gggaccagag gccctgtcat ctttactgct gctgctcttg gtggcaagtg
121gagatgctga catgaaggga cattttgatc ctgccaagtg ccgctatgcc ctgggcatgc
181aggaccggac catcccagac agtgacatct ctgcttccag ctcctggtca gattccactg
241ccgcccgcca cagcaggttg gagagcagtg acggggatgg ggcctggtgc cccgcagggt
301cggtgtttcc caaggaggag gagtacttgc aggtggatct acaacgactg cacctggtgg
361ctctggtggg cacccaggga cggcatgccg ggggcctggg caaggagttc tcccggagct
421accggctgcg ttactcccgg gatggtcgcc gctggatggg ctggaaggac cgctggggtc
481aggaggtgat ctcaggcaat gaggaccctg agggagtggt gctgaaggac cttgggcccc
541ccatggttgc ccgactggtt cgcttctacc cccgggctga ccgggtcatg agcgtctgtc
601tgcgggtaga gctctatggc tgcctctgga gggatggact cctgtcttac accgcccctg
661tggggcagac aatgtattta tctgaggccg tgtacctcaa cgactccacc tatgacggac
721ataccgtggg cggactgcag tatgggggtc tgggccagct ggcagatggt gtggtggggc
781tggatgactt taggaagagt caggagctgc gggtctggcc aggctatgac tatgtgggat
841ggagcaacca cagcttctcc agtggctatg tggagatgga gtttgagttt gaccggctga
901gggccttcca ggctatgcag gtccactgta acaacatgca cacgctggga gcccgtctgc
961ctggcggggt ggaatgtcgc ttccggcgtg gccctgccat ggcctgggag ggggagccca
1021tgcgccacaa cctagggggc aacctggggg accccagagc ccgggctgtc tcagtgcccc
1081ttggcggccg tgtggctcgc tttctgcagt gccgcttcct ctttgcgggg ccctggttac
1141tcttcagcga aatctccttc atctctgatg tggtgaacaa ttcctctccg gcactgggag
1201gcaccttccc gccagccccc tggtggccgc ctggcccacc tcccaccaac ttcagcagct
1261tggagctgga gcccagaggc cagcagcccg tggccaaggc cgaggggagc ccgaccgcca
1321tcctcatcgg ctgcctggtg gccatcatcc tgctcctgct gctcatcatt gccctcatgc
1381tctggcggct gcactggcgc aggctcctca gcaaggctga acggagggtg ttggaagagg
1441agctgacggt tcacctctct gtccctgggg acactatcct catcaacaac cgcccaggtc
1501ctagagagcc acccccgtac caggagcccc ggcctcgtgg gaatccgccc cactccgctc
1561cctgtgtccc caatggctct gcctacagtg gggactatat ggagcctgag aagccaggcg
1621ccccgcttct gcccccacct ccccagaaca gcgtccccca ttatgccgag gctgacattg
1681ttaccctgca gggcgtcacc gggggcaaca cctatgctgt gcctgcactg cccccagggg
1741cagtcgggga tgggcccccc agagtggatt tccctcgatc tcgactccgc ttcaaggaga
1801agcttggcga gggccagttt ggggaggtgc acctgtgtga ggtcgacagc cctcaagatc
1861tggttagtct tgatttcccc cttaatgtgc gtaagggaca ccctttgctg gtagctgtca
1921agatcttacg gccagatgcc accaagaatg ccaggaatga tttcctgaaa gaggtgaaga
1981tcatgtcgag gctcaaggac ccaaacatca ttcggctgct gggcgtgtgt gtgcaggacg
2041accccctctg catgattact gactacatgg agaacggcga cctcaaccag ttcctcagtg
2101cccaccagct ggaggacaag gcagccgagg gggcccctgg ggacgggcag gctgcgcagg
2161ggcccaccat cagctaccca atgctgctgc atgtggcagc ccagatcgcc tccggcatgc
2221gctatctggc cacactcaac tttgtacatc gggacctggc cacgcggaac tgcctagttg
2281gggaaaattt caccatcaaa atcgcagact ttggcatgag ccggaacctc tatgctgggg
2341actattaccg tgtgcagggc cgggcagtgc tgcccatccg ctggatggcc tgggagtgca
2401tcctcatggg gaagttcacg actgcgagtg acgtgtgggc ctttggtgtg accctgtggg
2461aggtgctgat gctctgtagg gcccagccct ttgggcagct caccgacgag caggtcatcg
2521agaacgcggg ggagttcttc cgggaccagg gccggcaggt gtacctgtcc cggccgcctg
2581cctgcccgca gggcctatat gagctgatgc ttcggtgctg gagccgggag tctgagcagc
2641gaccaccctt ttcccagctg catcggttcc tggcagagga tgcactcaac acggtgttgc
2701caactttctt gtacaaagtt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
2761aac

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