Construct: ORF ccsbBroadEn_14591

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012468.2_s300c1, BRDN0000458485
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CLK3 (1198)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1198 CLK3 CDC like kinase 3 NM_003992.4 100% 100%
2 human 1198 CLK3 CDC like kinase 3 NM_001130028.1 76.8% 76.8% 1_444del
3 mouse 102414 Clk3 CDC-like kinase 3 XM_006510739.3 92.7% 98.7% (many diffs)
4 mouse 102414 Clk3 CDC-like kinase 3 XM_017313060.1 92.7% 98.7% (many diffs)
5 mouse 102414 Clk3 CDC-like kinase 3 NM_007713.4 71.2% 75.8% (many diffs)
6 mouse 102414 Clk3 CDC-like kinase 3 XM_017313061.1 51.7% 54.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1536
ORF length:
1470
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgca tcactgtaag cgataccgct cccctgaacc agacccgtac ctgagctacc
121gatggaagag gaggaggtcc tacagtcggg aacatgaagg gagactgcga tacccgtccc
181gaagggagcc tcccccacga agatctcggt ccagaagcca tgaccgcctg ccctaccaga
241ggaggtaccg ggagcgccgt gacagcgata cataccggtg tgaagagcgg agcccatcct
301ttggagagga ctactatgga ccttcacgtt ctcgtcatcg tcggcgatcg cgggagaggg
361ggccataccg gacccgcaag catgcccacc actgccacaa acgccgcacc aggtcttgta
421gcagcgcctc ctcgagaagc caacagagca gtaagcgcag cagccggagt gtggaagatg
481acaaggaggg tcacctggtg tgccggatcg gcgattggct ccaagagcga tatgagattg
541tggggaacct gggtgaaggc acctttggca aggtggtgga gtgcttggac catgccagag
601ggaagtctca ggttgccctg aagatcatcc gcaacgtggg caagtaccgg gaggctgccc
661ggctagaaat caacgtgctc aaaaaaatca aggagaagga caaagaaaac aagttcctgt
721gtgtcttgat gtctgactgg ttcaacttcc acggtcacat gtgcatcgcc tttgagctcc
781tgggcaagaa cacctttgag ttcctgaagg agaataactt ccagccttac cccctaccac
841atgtccggca catggcctac cagctctgcc acgcccttag atttctgcat gagaatcagc
901tgacccatac agacttgaaa ccagagaaca tcctgtttgt gaattctgag tttgaaaccc
961tctacaatga gcacaagagc tgtgaggaga agtcagtgaa gaacaccagc atccgagtgg
1021ctgactttgg cagtgccaca tttgaccatg agcaccacac caccattgtg gccacccgtc
1081actatcgccc gcctgaggtg atccttgagc tgggctgggc acagccctgt gacgtctgga
1141gcattggctg cattctcttt gagtactacc ggggcttcac actcttccag acccacgaaa
1201accgagagca cctggtgatg atggagaaga tcctagggcc catcccatca cacatgatcc
1261accgtaccag gaagcagaaa tatttctaca aagggggcct agtttgggat gagaacagct
1321ctgacggccg gtatgtgaag gagaactgca aacctctgaa gagttacatg ctccaagact
1381ccctggagca cgtgcagctg tttgacctga tgaggaggat gttagaattt gaccctgccc
1441agcgcatcac actggccgag gccctgctgc accccttctt tgctggcctg acccctgagg
1501agcggtcctt ccacaccagc cgcaacccaa gcagatgccc aactttcttg tacaaagttg
1561gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)