Construct: ORF ccsbBroadEn_14997
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019028.1_s300c1, BRDN0000458646
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LMTK2 (22853)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 22853 | LMTK2 | lemur tyrosine kinase 2 | NM_014916.4 | 100% | 100% | |
| 2 | human | 22853 | LMTK2 | lemur tyrosine kinase 2 | XM_011515981.3 | 99.8% | 99.8% | 94_95insCAGGTG |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 4578
- ORF length:
- 4509
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcaccat gccggggccg ccggcgttgc ggcggaggct gctgctgctg ctgctggtcc 121 tcctgatcgc cggcagtgct ggggccgcgc cacttccgca aacaggtgca ggggaggcgc 181 cacctgctgc agaagtttcc tcatcttttg tgatcctgtg tgtgtgcagt ttaataatat 241 taatagtgtt aattgcaaac tgtgtatcct gctgtaagga cccagaaata gactttaagg 301 aatttgaaga taattttgat gatgagatag atttcacacc accagcagaa gacactccct 361 ctgttcagtc cccagcagag gtcttcacac tttcagtacc aaatatttca ctcccagctc 421 cctcgcaatt ccagccttct gtagagggat tgaagtctca agttgcccgc cacagtctaa 481 actacataca ggaaattgga aatggctggt ttggaaaggt tctcttggga gagatttaca 541 cgggcactag cgtagcaaga gtcatcgtga aggagttaaa agcaagtgcc aacccaaagg 601 aacaagatac ttttttgaaa aatggagaac cttactacat tcttcagcat ccaaatattc 661 ttcagtgtgt tggacagtgc gtagaagcga ttccctacct cctggtgttt gagttctgtg 721 acttgggtga cctgaaggcg tatctgcgca gcgagcagga gcacatgcgg ggggactcac 781 agaccatgct gctgcagagg atggcgtgcg aggtcgccgc ggggctggcc gccatgcaca 841 agctgcactt cctgcacagt gatttagccc tgcggaattg ttttctcacc tccgacttaa 901 atgtgaaagt gggagattac ggaataggat tcagcaggta caaggaggat tatattgaaa 961 cagatgataa aaaagttttc cctctgcgat ggactgctcc agaattagta accagctttc 1021 aagacagact gctaactgca gatcagacta agtatagtaa tatctggtct ctgggtgtga 1081 cactttggga gctttttgac aatgccgcac agccgtattc aaacctttcc aacttagatg 1141 tcctcaacca agtcattaga gagagagaca caaaactccc gaagccccag ctggagcagc 1201 cctactctga tagatggtat gaagtcttac agttctgttg gctgtcacca gaaaagagac 1261 ccgcggctga agatgtgcac aggctgctga cttacctgcg gctgcagagc cagcgggact 1321 cagaggtcga ctttgaacag cagtggaacg ctctgaagcc gaacacaaac agcagagact 1381 cctccaacaa tgctgcattc ccaattctcg accactttgc cagggaccgg ctgggtcgtg 1441 aaatggagga agtcctcacc gtgaccgaaa ccagccaggg cctgagcttc gagtatgtct 1501 gggaggccgc taagcacgac cactttgacg agcgcagccg gggccacctg gacgaaggct 1561 tgtcctacac gagcatcttc tatccggttg aagtttttga gagttcgctt tcagatcctg 1621 ggcccggaaa gcaagatgac agcggccagg atgtccccct gagggtccct ggagtggttc 1681 ctgtttttga tgcccacaac ctttctgttg gaagcgacta ttatatccag ttagaagaaa 1741 aaagtggtag taacttggag cttgattacc caccagcgct gctcacaacc gacatggata 1801 atccagaaag gactggccct gaactgtccc agctcacggc gctcaggagc gttgaacttg 1861 aggagtccag tacagatgag gacttcttcc aaagcagtac agaccccaaa gactctagct 1921 taccagggga cttacacgtg accagtggcc ccgagagccc tttcaacaat atatttaatg 1981 atgtggacaa atcggaagat ttgcccagtc accaaaaaat attcgactta atggaattaa 2041 acggagttca agccgacttt aaacctgcca ctttaagttc cagtttggat aaccccaaag 2101 agtcagtcat aacaggccac tttgagaaag aaaagccccg taagattttt gacagtgagc 2161 ctctctgcct atcagataat cttatgcacc aagataattt tgatccattg aatgttcaag 2221 aattgtcaga aaacttttta tttcttcaag agaaaaactt actaaaaggc tcattgtcca 2281 gcaaagaaca cataaatgat cttcagacag aacttaagaa tgctggtttt actgaagcta 2341 tgttagaaac gtcatgtaga aactctttag atactgagct tcagtttgct gaaaataagc 2401 caggcttgtc tttgttgcag gaaaacgtaa gcacaaaggg tgacgataca gatgtcatgc 2461 tcacaggtga cactttgagc acctcattgc agtcttcccc ggaagtgcag gtacctccta 2521 cctccttcga aacagaagaa acgccccgtc gggtaccccc agactcactc ccaacacagg 2581 gagaaaccca gcccacgtgt ttagatgtta ttgtcccgga ggactgtctc caccaggaca 2641 tcagtccaga cgctgtgact gtcccggttg aaattctctc aactgatgcc agaacccaca 2701 gcctggataa caggtcccag gactctcctg gcgagagtga ggagaccctg cgactcaccg 2761 aaagtgactc tgttcttgct gatgacatcc ttgccagcag ggtgagtgta gggagtagtc 2821 tcccggaact gggacaggaa ttgcacaata aaccattttc ggaagaccat cacagtcatc 2881 gccggctaga gaaaaactta gaggctgtgg agactttaaa tcagctcaat tctaaagacg 2941 cagcaaaaga agcaggcttg gtgtctgccc tctcctcgga ctcaaccagt caggacagcc 3001 tcctggagga cagcttgtca gcacccttcc cagcctctga gccgtccctg gaaaccccgg 3061 actctctgga gtcagtggat gtccacgaag cgctactgga ctctttagga tctcacactc 3121 cccagaaact agtgcccccc gataagccgg cagacagtgg ctacgaaaca gagaacttgg 3181 agtctcccga gtggaccttg catcccgctc ccgagggcac cgcagactca gaaccagcca 3241 ccacgggcga tggcggccac agcggtctgc ctcccaaccc ggtcattgtc atctcagatg 3301 ccggcgatgg tcacagaggc acagaagtga cccctgagac gttcacagct ggctcccagg 3361 gttcataccg agactctgcg tacttctcag acaatgactc tgagcccgag aaaaggtctg 3421 aggaggtccc gggaacctcc ccatccgcct tggtgttggt acaggagcag cccctacccg 3481 agccagtcct ccccgagcaa agtcctgctg cccaggatag ctgcctggaa gccagaaaga 3541 gccagccaga tgaaagttgt ctgtctgctt tgcacaactc cagtgacctg gaattaagag 3601 ccacgccgga gccagcacag actggtgttc cccagcaggt gcatcccacg gaagacgagg 3661 ccagcagtcc ctggagtgtg ctgaatgcag aacttagcag cggcgatgac ttcgagacac 3721 aggacgatcg cccctgcacc ctcgcttcca cggggaccaa cacgaacgaa ctccttgcct 3781 acaccaattc tgcgctggac aagtccctgt ccagccactc cgagggcccg aagttgaagg 3841 agccggacat cgaagggaag tacctgggga aactcggggt gtcagggatg ctcgacctct 3901 cagaggacgg gatggatgca gacgaggagg acgaaaacag cgacgactcg gacgaggacc 3961 tgcgggcctt caacctgcat agcctcagct ccgagtcgga ggacgagacc gagcaccccg 4021 tgcccatcat cctcagcaac gaggacggaa ggcacctgcg gagtctgttg aagcccacag 4081 cggccaatgc ccccgaccca ctgcccgagg actggaagaa ggaaaagaag gcagtcacgt 4141 ttttcgatga tgtcacagtc tacctgtttg accaggagac cccaaccaaa gagctggggc 4201 cctgtggagg agaggcgtgc ggcccggacc tgagcggccc agccccagcc tcaggctctc 4261 cctacctgag caggtgcatc aactccgaaa gctccaccga cgaagaaggt ggtggctttg 4321 agtgggatga tgacttctcc ccagatcctt ttatgtcaaa gacaacaagt aacctgctca 4381 gctccaagcc ttctctccaa acatccaagt acttttctcc gccgccaccg gcccggagca 4441 cggagcagag ctggccgcac tcggcgcctt actcccggtt ctccatctct cccgccaaca 4501 ttgccagctt ttccctcaca cacctgaccg actcggacat cgagcagggc ggaagcagcg 4561 aagacggaga aaaggacttg ccaactttct tgtacaaagt tggcattata agaaagcatt 4621 gcttatcaat ttgttgcaac gaac