Construct: ORF ccsbBroadEn_15017
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018833.1_s300c1, BRDN0000458129
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- TSSK2 (23617)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23617 | TSSK2 | testis specific serine kina... | NM_053006.5 | 99.6% | 29.9% | (many diffs) |
| 2 | mouse | 22115 | Tssk2 | testis-specific serine kina... | NM_009436.2 | 89.4% | 28.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 98
- ORF end:
- 710
- ORF length:
- 612
- Sequence:
-
1 TAGGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT 61 TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCACCATG GACGATGCCA CAGTCCTAAG 121 GAAGAAGGGT TACATCGTAG GCATCAATCT TGGCAAGGGT TCCTACGCAA AAGTCAAATC 181 TGCCTACTCT GAGCGCCTCA AGTTCAATGT GGCTGTCAAG ATCATCGACC GCAAGAAAAC 241 ACCTACTGAC TTTGTGGAGA GATTCCTTCC TCGGGAGATG GACATCCTGG CAACTGTCAA 301 CCACGGCTCC ATCATCAAGA CTTACGAGAT CTTTGAGACC TCTGACGGAC GGATCTACAT 361 CATCATGGAG CTTGGCGTCC AGGNCGACCT CCCTCGAGGT TCATCAAGTG CCAGGGAGCC 421 CTGCATGAGG ACGTGGCACG CAAGATGTTC CGACAGCTCT CCTCCGCCGT CAAGTACTGC 481 CACGACCTGG ACATCGTCCA CCGGGACCTC AAGTGCGAGA ACCTTCTCCT CGACAAGGAC 541 TTCAACATCA AGCTGTCTGA CTTTGGCTTC TCCAAGCGCT GCCTGCGGGA CAGCAATGGG 601 CGCATCATCC TCAGCAAGAC CTTCTGCGGG TCGGCAGCAT ATGCAGCCCC CGAGGTGCTG 661 CAGAGCATCC CCTACCAGCC CAAGGTGTAT GACATCTGGA GCCTGGGCGT GATCCTGTAC 721 ATCATGGTCT GCGGCTCCAT GCCCTATGAC GACTCCGACA TCANGAAGAT GCTGCGTATC 781 CAGAAGGAGC ACCGTGTGGA CTTCCCGCGC TCCAAGAACC TGACCTGCGA GTGCAAGGAC 841 CTCATCTACC GCATGCTGCA GCCCGACGTC AGCCAGCGGC TCCACATCGA TGAGATCCTC 901 AGCCACTCGT GGCTGCAGCC CCCCAAGCCC AAAGCCACGT CTTCTGCCTC CTTCAAGAGG 961 GAGGGGGAGG GCAAGTACCG CGCTGAGTGC AAACTGGACA CCAAGACAGG CTTGAGGCCC 1021 GACCACCGGC CCGACCACAA GCTTGGAGCC AAAACCCAGC ACCGGCTGCT GGTGGTGCCC 1081 GAGAACGAGA ACAGGATGGA GGACAGGCTG GCCGAGACCT CCAGGGCCAA AGACCATCAC 1141 ATCTCCGGAG CTGAGGTGGG GAAAGCAAGC ACCTTGCCAA CTTTCTTGTA CAAAGTTGGC 1201 ATTATAAGAA AGCATTGCTT ATCAATTTGT TGCAACGAAC AGGTCACTAT CAGTCAAAAT 1261 AAAATCATTA TTGCCATCCA GCGATCAAGA