Construct: ORF ccsbBroadEn_15042
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009416.1_s300c1, BRDN0000455577
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NMRK2 (27231)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 27231 | NMRK2 | nicotinamide riboside kinase 2 | NM_170678.2 | 95.2% | 93.4% | (many diffs) |
| 2 | human | 27231 | NMRK2 | nicotinamide riboside kinase 2 | NM_001289117.1 | 93.2% | 91.4% | (many diffs) |
| 3 | human | 27231 | NMRK2 | nicotinamide riboside kinase 2 | XM_024451452.1 | 92.2% | 91.9% | 323_324ins51;596C>T |
| 4 | human | 27231 | NMRK2 | nicotinamide riboside kinase 2 | XM_006722725.3 | 90.2% | 89.9% | 116_130del;338_339ins51;611C>T |
| 5 | human | 27231 | NMRK2 | nicotinamide riboside kinase 2 | XM_017026597.1 | 58.4% | 51.7% | (many diffs) |
| 6 | human | 27231 | NMRK2 | nicotinamide riboside kinase 2 | XM_006722726.3 | 57.2% | 50.6% | (many diffs) |
| 7 | human | 27231 | NMRK2 | nicotinamide riboside kinase 2 | NR_110316.1 | 56.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 738
- ORF length:
- 669
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAAGCTCATC GTGGGCATCG GAGGCATGAC CAACGGCGGC AAGACCACGC 121 TGACCAACAG CCTGCTCAGA GCCCTGCCCA ACTGCTGCGT GATCCATCAG GATGACTTCT 181 TCAAGCCCCA AGACCAAATA GCAGTTGGGG AAGACGGCTT CAAACAGTGG GACGTGCTGG 241 AGTCTCTGGA CATGGAGGCC ATGCTGGACA CCGTGCAGGC CTGGCTGAGC AGCCCGCAGA 301 AGTTTGCCCG TGCCCACGGG GTCAGCGTCC AGCCAGAGGC CTCGGACACC CACATCCTCC 361 TCCTGGAAGG CTTCCTGCTC TACAGCTACA ATCATCCTGG CAGGCATGAA GTCCCGGAAg 421 aagagtgcaa gtggaggaga agtacccgca actacacagt ccctgatccc cccggcctct 481 tcgatggcca cgtgtggccc atgtaccaga agtataggca ggagatggag gccaacggtg 541 tggaagtggT CTACCTGGAC GGCATGAAGT CCCGAGAGGA GCTCTTCCGT GAAGTCCTGG 601 AAGACATTCA GAACTCGCTG CTGAACCGCT CCCAGGAATC AGCCCCCTCC CCGGCTCGCC 661 CAGCCAGGAC ACAGGGACCC GGACGCGGAT GCGGCCACAG AACGGCCAGG CCTGTAGCGT 721 CCCAGCAGGA CAGCATGTTG CCAACTTTCT TGTACAAAGT TGGcattata agaaagcatt 781 gcttatcaat ttgttgcaac gaac