Construct: ORF ccsbBroadEn_15137
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018851.1_s300c1, BRDN0000458147
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- IPPK (64768)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64768 | IPPK | inositol-pentakisphosphate ... | NM_022755.6 | 69% | 6.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 397
- ORF end:
- 952
- ORF length:
- 555
- Sequence:
-
1 ANNTNNNTTT NNNTTNGANN NNNNNTNACN NGGATACTGT AACTAAGTAA GAAGTAATGA 61 TAAAAAAAAA TTCATATCTT CATACGTTTT TTTATAAGTA AGAGTCATTA ATCTACATCA 121 CTACTCACTC ATTTCCGGGG TCTGACCAAC AACCTCCAGC ATGTTTTTTT GTGTCTTTTA 181 TAACTGAATG ACATAAAGAA CAAACACAAC AAAATATAAA TGAAAAAGAT ATTTTCTTTT 241 TTTTTTCCCA GTCACAGACG ATGCAACACG ACGGCCAGTC TTAAGCTTGG GCCCCAAATA 301 ATGATTTTAT TTTGACTGAT AGTGACCTGT TCGTTGCAAC AAATTGATGA GCAATGCTTT 361 TTTATAATGC CAACTTTGTA CAAAAAAGTT GGCACCATGG ATCTCAAAGG AAAGATGCCA 421 AATAAGATGA TTCGAAAAGG TGTGTTCAAA GATCAGCATT TTGATCAAAA TCTCAACTTC 481 ATGTACATAG AAGTTGATAA AGTAACAGAG AGGGAGAAAG TTACTGTTAT GAGCACCATT 541 AATCCAACTA AGGACCTGTT GGCTGACTTG ATTGGGTGCC AGAGACTTCC TGAAGACCAA 601 CGTAAGAAAG TACACCAGCT AAAGGACTTG TTGGACCAGA TTCTGATGTT GGACCCAGCT 661 AAACGAATTA GCATCAACCA GGCCCTACAG CATGCCTTCA TCCAGGAAAA AATTTTGCCA 721 ACTTTCTTGT ACAAAGTTGG CATTATAAGA AAGCATTGCT TATCAATTTG TTGCAACGAA 781 CAGGTCACTA TCAGTCAAAA TAAAATCATT ATTTGCCATC CAGCTGATAT CNNCTATAGT 841 GANTCNNNTT ACATGGNCAT AGCTGTTTCC TGGCAGCTCT GGCCCGTGTC TCAAAATCTT 901 AGAATGTTAC ACAACATGTC CCATGGAACA AAGAATTTCC CCTCAAGTCC ATAAAAAAAT 961 TTGAAATCTC ATGCGTAGCG AGACAACAGG AGAGCCCCGA TATCCCTGCA ATCATTATTA 1021 CAAGTTATCC GAATTGCACA GACGCTTTCA TCCCTTCCAT CTCGATAGGT GCAAATAAAA 1081 GCAAAGTATG CAATCATTAT GAGAAGAAAT GACACGTCGA TTACATCCTG CCTTACTGGC 1141 TTCCAGCAAA AGTTAGCCAT TACTTAACTT ATGTGTCGTG AGCATAGTTC TCgctgcaaa 1201 gatgcccgga gccccgtggc tgactggagc gagcttgcac accacctgaa gccgttcttc 1261 ttcccttcca acggcctggc cagtgggccc cactgcacaa gggctgtgat cagggagctg 1321 gtgcacgtga tcacacgggt gctgctgagt ggctcggaca agggccgggc aggcaccctg 1381 agtccggggc tcgggcctca gggcccgcga gtctgcgaag ccagcccttt cagtaggagc 1441 cttcgctgcc aaggaaaaaa caccccagag cgctcggggt taccgaaggg ctgtcttctg 1501 tacaaaaccc tccaggtgca gatgttggac ctgctggaca tcgaaggcct ctaccctctg 1561 tacaaccggg ttgagcgata cctggaagag tttcccgagg agagaaaaac cttacaaata 1621 gatgggcctt atgatgaagc attttaccag aagctgcttg acctttccac tgaggatgac 1681 gggacagtgg ccttcgcgct aacgaaggtg cagcagtacc gcgtcgccat gactgccaag 1741 gactgctcca tcatgattgc actgtctccc tgtctgcagg atgccagctc tgatcaaagg 1801 cctgtcgtcc cttcatcgag gtccaggttt gccttttccg tgtctgtgct ggaccttgac 1861 ctcaagccct acgagagcat tccccatcag tataaactgg acggcaagat cgtcaactat 1921 tattcaaaga ctgtacgtgc caaagacaac gccgtgatgt cgactcggtt caaggaaagc 1981 gaagattgca cattagttct ccacaaggtc ttgccaactt tcttgtacaa agttggcatt 2041 ataagaaagc attgcttatc aatttgttgc aacgaac