Construct: ORF ccsbBroadEn_15219
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000375.1_s300c1, BRDN0000392847
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LENG9 (94059)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 94059 | LENG9 | leukocyte receptor cluster ... | NM_001301782.2 | 99.3% | 62.9% | (many diffs) |
| 2 | human | 94059 | LENG9 | leukocyte receptor cluster ... | NM_198988.2 | 95.3% | 62.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1503
- ORF length:
- 1437
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC AGCGGCCAGG AGAgccggag ttgccgcagg aagcccccgc cacggaaccc 121 gcgcccccgc cggcctgccg cttcttcctg gaaggccgct gccgcttcgg cgcccgctgc 181 cgccagcccc accctggggc gccggcgccg cctggccgcg aggcgcagcc ggaggccggg 241 gccaagaagc cgccgctgcg cacagccgcg gacgtcatcc agcgcatccg ctgggacccg 301 cgcctcgacc ccgccgactt ctcggtgggc tacgtcgacc gctttctggg tgtgcgcgag 361 gagcccttca gcgccttttg ctgggaccag ccgctggcgg cgctcgggcc gggcgtgctg 421 gcagtgcccc agcaccgcgt gcgcttcttc cgcttccatg gccgccttgt gtgggaccgc 481 gcctcgcgca ccgacctcgt ctttggctct ggctcggcgg cgggacgcgg gcccaccatc 541 ctggacgcac cgaacaccga gggcgcccac ggggcagagg gtgccgagtg gacactggcg 601 gggacaggtc aggaggccca ggctgccccc aagcgaggga gcacaaggcc gctctgcaca 661 gggcaccagg aaccaggcgt ggaggaaccc ggagagcTGG CAGCGGCCAG GAGAGGGCGC 721 TGGGCACAGC TGCTGATTTG GGAACACTGG CCCCAAGAGG ACGCCTCGCC GGAGTGACTG 781 AGGAGGCACT GAAGCCAACA GCAGCCACCA GGACCACATT GCTGGGGGGC AAGGAAGCAC 841 AGGCCCTGGG AGTCCCGGGG GGCTCCGCTG AGACGACAGA AGCCGAGTGG GGTCCTGCGG 901 CCTGGCCCGA GGACAAAAGG GCCCGCCTTA GTGTTGCAGC CCCTTGCCAA CCGCGCCCCA 961 CACATTTTGT GGCCCTCATG GTGACCGAGC CTGGGCTACA AGCAGAAGTG ACCAAGGCCC 1021 AGGAATACCT GGTCCACGTG GCCCCACACT GCGCCAACTT CCTAGTGCCC TCTCAGAACC 1081 TACACCTGAC CCTGGCCCTG CTGCGACTGG CAGGCGCTGG GGAGGAGGCC GCTGCCATTG 1141 GAGCTCTGAG ACGGGCCCTC TTGGCCCCGG GGCTAAATGC ACCCCCTCGG CTGAGCTTTA 1201 GAAAGCTGGT CCTCCTGGGC CCGCATGTGC TGTGTGCCCC ACCCTCTCCC ACACTGGAAA 1261 GCATGGCACA AGTGCTGAGC CAGAGGCTGG AAGCCGAGGG GCTGAGTACA CTACAGTCTC 1321 CAGGGCAGCT GCACCCCCAC CTCACCGTGG CCAAGGTGCC CCATGGTTCC CAGGTCCACC 1381 TCCCCAAGCT GGAGTTCACC CTCAGCCAGG AAGTGGGGTG CCAGCCCCTG CAGACACTCT 1441 GGCTGTGCCG TATAGGGAGG ACAGGGGGGC CTTTCCAGCC CCTGGCTGAG ATCCGCCTGG 1501 AGTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 1561 gcaacgaac