Construct: ORF ccsbBroadEn_15224
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015969.1_s300c1, BRDN0000456821
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GPRIN1 (114787)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 114787 | GPRIN1 | G protein regulated inducer... | NM_052899.3 | 99.8% | 99.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3090
- ORF length:
- 3024
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CACTGCTGAA GACCCGGCCT GGCTCCAGCT GCTTCAAAAG GATTCCAGCC 121 CCCCAGGACC CCGACCCACA GCCTTCTTCT GCCCACAGGA TGGGAGCCTG GGGGCTGGCA 181 GCTCGGCTAT GAGGGATTAC TGCCCCTCCC AGCAAAAGGC AAGCCCTGCA CCCCCCAGGC 241 ACACCCCTGA CCAAAGCCCA GGCATGGAGT CTAGACACAG AAGCCCCAGT GGGGCTGGGG 301 AAGGGGCCTC CTGCTCTGAC GGCCCCAGAG GGAGCCTGGC CTGCCCCTCC CCAACCTGCT 361 TCTCTCCCCA GGAGTCACCC TCCAAGGAGA CATTGGAGGC ACATGGAGCC TCCATCTCAG 421 GGACAACAGA AGCCACCACG TCTGGGAAGC CAGAGCCTGT GTCCTCCGTG AAAACTGAGC 481 CCAAATCCTC AGATGACAGA AATCCCATGT TCTTAGAGAA GATGGATTTC AAGTCCTCAA 541 AGCAGGCCGA TTCCACTTCC ATAGGAAAGG AGGATCCTGG GTCCTCACGG AAGGCAGATC 601 CCATGTTTAC AGGAAAGGCA GAGCCTGAAA TCTTGGGAAA GGGGGATCCT GTGGCTCCTG 661 GAAGGATGGA TCCCATGACT GTAAGAAAGG AAGATCTTGG ATCCCTGGGA AAAGTAGATC 721 CTTTGTGCTC CAGCAAGACG TATACAGTGT CACCGAGGAA GGAGGATCCT GGGTCTTTGA 781 GAAAGGTGGA TCCTGTGTCC TCAGACAAAG TGGACCCTGT ATTCCCAAGA AAGGAGGAGC 841 CCAGGTATTC AGGAAAAGAG CATCCTGTGT CCTCAGAAAA GGTCGCTCCT ACATCTGCAG 901 AAAAGGTAGA TCTTGTATTG TCGGGAAAGA GAGATCCTGG GCCCTCGGGA AAGGCAGATC 961 CCGTGCCCTT GGAAAGCATG GATTCTGCGT CCACAGGAAA GACAGAGCCG GGGCTCCTGG 1021 GCAAGCTGAT TCCAGGCTCA TCAGGCAAGA ATGGGCCTGT ATCCTCTGGG ACCGGGGCTC 1081 CTGGGTCCTT GGGAAGGCTG GATCCCACAT GCTTGGGGAT GGCAGATCCC GCATCTGTGG 1141 GAAATGTAGA AACTGTGCCT GCCACAAAAG AGGACTCCCG GTTCCTGGGA AAGATGGACC 1201 CTGCCTCCTC AGGAGAGGGG CGTCCTGTGT CTGGCCACAC GGATACTACG GCTTCAGCAA 1261 AGACAGATCT CACATCTTTG AAAAATGTGG ATCCCATGTC TTCAGGCAAG GTGGATCCAG 1321 TTTCTCTGGG AAAGATGGAC CCCATGTGCT CAGGAAAGCC AGAGCTCTTG TCTCCTGGAC 1381 AGGCAGAGCG TGTGTCTGTG GGAAAGGCAG GAACTGTATC CCCAGGAAAA GAGGACCCGG 1441 TGTCCTCCAG AAGGGAGGAC CCCATATCTG CTGGAAGTAG AAAGACATCA TCTGAAAAAG 1501 TGAATCCTGA GTCTTCAGGA AAGACAAACC CTGTGTCTTC AGGTCCAGGC GATCCCAGGT 1561 CCTTGGGGAC AGCAGGTCCC CCATCTGCAG TAAAGGCTGA GCCAGCGACA GGGGGAAAAG 1621 GAGATCCCCT GTCCTCGGAG AAGGCAGGTC TGGTGGCCTC TGGAAAGGCG GCTCCCACAG 1681 CCTCAGGGAA GGCCGAGCCC CTCGCGGTGG GCAAGGAGGA CCCTGTGAGC AAGGGAAAGG 1741 CAGACGCTGG CCCCTCTGGA CAAGGGGACT CTGTGTCTAT AGGTAAAGTG GTCTCAACTC 1801 CAGGAAAAAC AGTCCCGGTG CCCTCGGGGA AGGTGGATCC CGTGTCCCTG GGAAAAGCAG 1861 AAGCTATCCC AGAGGGAAAA GTGGGTTCTC TGCCTCTAGA GAAGGGGAGT CCTGTTACCA 1921 CCACAAAGGC GGATCCCAGG GCCTCGGGGA AAGCACAGCC GCAGTCTGGT GGCAAAGCAG 1981 AAACAAAGCT CCCTGGGCAA GAGGGCGCTG CAGCACCAGG AGAAGCAGGG GCTGTGTGTT 2041 TGAAAAAGGA GACACCACAG GCCTCAGAGA AGGTGGATCC TGGATCCTGC AGAAAAGCAG 2101 AGCCCCTTGC CTCAGGGAAG GGAGAGCCTG TGTCCCTGGG GAAAGCCGAC TCTGCACCTT 2161 CCAGAAAAAC GGAGTCCCCA TCCTTGGGGA AGGTGGTCCC CCTGAGTCTG GAGAAGACCA 2221 AGCCGTCCTC CTCCTCCAGG CAGTTAGACC GCAAAGCCCT CGGCTCAGCC CGGTCTCCCG 2281 AGGGTGCCAG GGGCAGTGAA GGCCGCGTGG AGCCGAAGGC CGAGCCCGTG TCCAGCACCG 2341 AGGCCTCCAG TCTCGGCCAG AAAGACCTGG AAGCCGCTGG GGCCGAGAGA AGCCCCTGCC 2401 CAGAGGCCGC AGCGCCCCCG CCGGGGCCGC GGACTCGCGA CAACTTCACC AAGGCGCCGT 2461 CGTGGGAGGC GAGCGCCCCG CCGCCGCCGC GCGAGGACGC GGGCACTCAG GCGGGCGCGC 2521 AGGCCTGCGT CTCAGTGGCC GTGAGCCCCA TGTCTCCGCA GGACGGCGCT GGGGGCTCGG 2581 CCTTCAGCTT CCAGGCGGCG CCGCGCGCGC CCAGCCCGCC CTCGCGCCGA GATGCGGGCC 2641 TGCAGGTGTC GCTGGGCGCC GCCGAGACGC GCTCAGTGGC CACTGGGCCC ATGACACCTC 2701 AAGCCGCCGC GCCGCCCGCC TTCCCCGAAG TGCGGGTGCG GCCCGGCTCA GCGCTGGCGG 2761 CCGCTGTAGC GCCCCCGGAG CCGGCTGAGC CCGTGCGAGA CGTGAGCTGG GACGAGAAGG 2821 GCATGACGTG GGAGGTATAC GGCGCCGCCA TGGAGGTGGA GGTGCTGGGC ATGGCCATCC 2881 AGAAGCATCT GGAGCGACAG atcgaggagc acggccgcca aggggcgccc gcgccgccgc 2941 ccgccgcccg tgccggcccc ggccgttcgg GCTCGGTGCG CACCGCGCCC CCAGATGGCG 3001 CCGCCAAGCG TCCGCCCGGC CTGTTCCGCG CGCTGCTGCA GAGTGTGCGC CGGCCGCGGT 3061 GCTGCTCGCG GGCGGGACCC ACGGCCGAGT GCCCAACTTT CTTGTACAAA GTTGGcatta 3121 taagaaagca ttgcttatca atttgttgca acgaac