Construct: ORF ccsbBroadEn_15238
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018879.1_s300c1, BRDN0000458175
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- UHMK1 (127933)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 127933 | UHMK1 | U2AF homology motif kinase 1 | NM_175866.5 | 99.6% | 37.9% | (many diffs) |
| 2 | human | 127933 | UHMK1 | U2AF homology motif kinase 1 | NM_144624.2 | 81.6% | 46.2% | (many diffs) |
| 3 | human | 127933 | UHMK1 | U2AF homology motif kinase 1 | NM_001184763.1 | 80.5% | 17.1% | (many diffs) |
| 4 | mouse | 16589 | Uhmk1 | U2AF homology motif (UHM) k... | NM_010633.3 | 92.6% | 37.7% | (many diffs) |
| 5 | mouse | 16589 | Uhmk1 | U2AF homology motif (UHM) k... | XM_006496682.3 | 75.6% | 45.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 96
- ORF end:
- 582
- ORF length:
- 486
- Sequence:
-
1 AGATTTTATT TTGACTGATA GTGACCTGTT CGTTGCAACA AATTGATGAG CAATGCTTTT 61 TTATAATGCC AACTTTGTAC AAAAAAGTTG GCACCATGGC GGGATCCGGC TGCGCCTGGG 121 GCGCGGAGCC GCCGCGTTTT CTGGAGGCCT TCGGGCGGCT GTGGCAGGTA CAGAGCCGTC 181 TGGGTAGCGG CTCCTCCGCC TCGGTGTATC GGGTTCGCTG CTGCGGCAAC CCTGGCTCGC 241 CCCCCGGCGC CCTCAAGCAG TTCTTGCCGC CAGGAACCAC CGGGGCTGCG GCCTCTGCCG 301 CCGAGTATGG TTTCCGCAAA GAGAGGGCGG CGCTGGAACA GTTGCAGGGT CACAGAAACA 361 TCGTGACTTT GTATGGAGTG TTTACAATCC ACTTTTCTCC AAATGTGCCA TCACGCTGTC 421 TGTTGCTTGA ACTCCTGGAT GTCAGTGTTT CGGAATTGCT CTTATATTCC AGTCACCAGG 481 GTTGTTCCAT GTGGATGATA CAGCATTGTG CCCGAGATGT TTTGGAGGCC CTTGCTTTTC 541 TTCATCATGA GGGCTATGTC CATGCGGACC TCCAANCCAC GTAACATATT GTGGAGTGCA 601 GAGAATGAAT GTTTTAAANT CATTGGACTT TGGACTTAGC TTCAAAGAAG GCAATCAGGA 661 TGTAAAGTAT ATTCAGACAG ACGGGTATCG GGCTCCAGAA GCAGAATTGC AAAATTGCTT 721 GGCCCAGGCT GGCCTGCAGA GTGATACAGA ATGTACCTCA GCTGTTGATC TGTGGAGCCT 781 AGGAATCATT TTACTGGAAA TGTTCTCAGG AATGAAACTG AAACATACAG TCAGATCTCA 841 GGAATGGAAG GCAAACAGTT CTGCTATTAT TGATCACATA TTTGCCAGTA AAGCAGTGGT 901 GAATGCCGCA ATTCCAGCCT ATCACCTAAG AGACCTTATC AAAAGCATGC TTCATGATGA 961 TCCAAGCAGA AGAATTCCTG CTGAAATGGC ATTGTGCAGC CCATTCTTTA GCATTCCTTT 1021 TGCCCCTCAT ATTGAAGATC TGGTCATGCT TCCCACTCCA GTGCTAAGAC TGCTGAATGT 1081 GCTGGATGAT GATTATCTTG AGAATGAAGA GGAATATGAA GATGTTGTAG AAGATGTAAA 1141 AGAGGAGTGT CAAAAATATG GACCAGTGGT ATCTCTACTT GTTCCAAAGG AAAATCCTGG 1201 CAGAGGACAA GTCTTTGTTG AGTATGCAAA TGCTGGTGAT TCCAAAGCTG CGCAGAAATT 1261 ACTGACTGGA AGGATGTTTG ATGGGAAGTT TGTTGTGGCT ACATTCTACC CGCTGAGTGC 1321 CTACAAGAGG GGATATCTGT ATCAAACCTT GCTTTTGCCA ACTTTCTTGT ACAAAGTTGG 1381 CATTATAAGA AAGCATTGCT TATCAATTTG TTGCAACGAA CAGGTCACTA TCAGTCAAAA 1441 TAAAATCATT ATTGCCATCC CAGCCTGATA