Construct: ORF ccsbBroadEn_15310
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018835.1_s300c1, BRDN0000458131
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- BMP2KL (347359)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55589 | BMP2K | BMP2 inducible kinase | XM_017008382.1 | 44.6% | 15.9% | (many diffs) |
| 2 | human | 55589 | BMP2K | BMP2 inducible kinase | XM_017008381.1 | 35.7% | 12.7% | (many diffs) |
| 3 | human | 55589 | BMP2K | BMP2 inducible kinase | XM_005263117.1 | 34.3% | 12.2% | (many diffs) |
| 4 | human | 55589 | BMP2K | BMP2 inducible kinase | NM_198892.1 | 33.2% | 11.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 81
- ORF end:
- 555
- ORF length:
- 474
- Sequence:
-
1 CGATAGTGAC CTGTTCGTTG CAACAAATTG ATGAGCAATG CTTTTTTATA ATGCCAACTT 61 TGTACAAAAA AGTTGGCACC ATGATTGCCC CTTCTCCTAA GAGCAGTGAA GAGGAAGGGC 121 AAAAGGATGA AGAAGTTCTT CAGGGAGAAC AAGGAGATTT TAATGATAAT GATACCGAAC 181 CAGAAAATCT GGGTCACAGG CCTCTCCTCA TGGATTCTGA AGATGAGGAA GAAGAGGAGA 241 AACGTAGCTC TGATTCTGAT TATGAGCAGG CTAAAGCAAA GTACAGTGAT ATGAGCCCTG 301 TCTACAGAGA CAAATCTGGC AGTGGACCAA CCCAAGATAT TAATACAATA CTCCTCACCT 361 CAGCCCAATT GTCCTCTGAT GTTGGAGTGG AGACTCCTAA ACAGGAGTTC GATATATTTG 421 GCGCCGTCCC CTTCTTTGCA GTGTGTGCTC AACAGCCCCA GCAAGAAAAG AATGAAAAGA 481 GCCTCCCTCA ACACAGGTTT CCTGCTACGG GACTCCAGCA GGAGGAATTT GATGTTATTC 541 ACAAAGGCGC CTTTTAGCAA GAAGGTGAAT GTACAAGAAT GCCATGCGGT GGGGCCTGAG 601 ACACATCCCA AAAGCATAGA TATATTTGAC TTCACTCCAT TTCAGCCNTT CCTCACATCA 661 ACAAGTAAAA GTGAAAGCAA CGAGGACCTT TTTGGGCTTG TGCCCTTTGA GGAAATAATG 721 GGGAGCCAGC AGCAAAAAGT CAAAACAGCG CAGCTTACAG AAACTGTCCT CTCGCCAAAG 781 GCGCACAAAG CAGGATATGT CCAAAAGTAN TNNGNAGCGG CATCATGGCA CGCCAACTAG 841 CAAAAAGNAG ACTTTGAAGC CNANCTACTA CGCACTCCAG AGAGGGCTCG CAGGCACAAA 901 AAAGTGGGGT CGCCGAGTCT CTCAAACCAG CAATGAATTT GTAACCATCT CAGACTCCAA 961 GGAGAACATT GGTGCCGCAG TGACTGATGG GAACGATAGG GGGAACGTCT TACAACTCGA 1021 GGAGAGTCTG TTGGACCCCT TTGGTGCCAA GCCCTTCCAT CCTCCAGACC TGTCATGGCA 1081 CCCTCTACAT CAGGGCCTGA ATGACATCCG TGCTGATCAC AATACTGTCC TGCCTAAGCA 1141 GCCAAGGCAA AATTCACTAC ATGGGTCATT CCATAGTGCA GATGTATTGA CAATGGATGA 1201 TTTTGGTGCC ATGCCCTTTA CAGAACTTGT GGTGCAAAGC ATCACTCTAC AGCAGTCCCA 1261 ACAGTCCCAA CCAGTCGAAT TAGACCCATT TGGTGCTGCC CCATTTCCTT CTAAACAGTT 1321 GCCAACTTTC TTGTACAAAG TTGGCATTAT AAGAAAGCAT TGCTTATCAA TTTGTTGCAA 1381 CGAACAGGTC ACTATCAGTC AAAATAAAAT CATTATTGCC ATCCAGCGAA GGCGA