Construct: ORF ccsbBroadEn_15540

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009357.1_s300c1, BRDN0000388790
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
THAP12 (5612)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5612 THAP12 THAP domain containing 12 NM_004705.4 19.7% 19.7% 1_1833del
2 human 5612 THAP12 THAP domain containing 12 NR_130898.1 13% 1_2057del;2508_3437del
3 mouse 72981 Thap12 THAP domain containing 12 XM_006508223.3 22.7% 25% (many diffs)
4 mouse 72981 Thap12 THAP domain containing 12 XM_006508224.3 22.7% 25% (many diffs)
5 mouse 72981 Thap12 THAP domain containing 12 NM_028410.1 17.5% 19.3% (many diffs)
6 mouse 72981 Thap12 THAP domain containing 12 XM_011241915.2 17.5% 19.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
516
ORF length:
450
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatggg acaactcaaa ttcaatacgt cggaggaaca ccatgctgac atgtatagaa
121gtgacttacc caatcctgac acgctgtcag ctgagcttca ttgttggaga atcaaatgga
181aacacagggg gaaagatata gagcttccgt ccaccatcta tgaagccctc cacctgcctg
241acatcaagtt ttttcctaat gtgtatgcat tgctgaaggt cctgtgtatt cttcctgtga
301tgaaggttga gaatgagcgg tatgaaaatg gacgaaagcg tcttaaagca tatttgagga
361acactttgac agaccaaagg tcaagtaact tggctttgct taacataaat tttgatataa
421aacacgacct ggatttaatg gtggacacat atattaaact ctatacaagt aagtcagagc
481ttcctacaga taattccgaa actgtggaaa atacctnncc aactttcttg tacaaagttg
541gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)

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