Construct: ORF ccsbBroadEn_15627
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003780.1_s300c1, BRDN0000397606
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BSND (7809)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7809 | BSND | barttin CLCNK type accessor... | NM_057176.3 | 53.1% | 41.7% | 398delC;450delC;513_960del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 576
- ORF length:
- 510
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatggc tgacgagaag accttccgga tcggcttcat tgtgctgggg cttttcctgc 121 tggccctcgg tacgttcctc atgagccatg atcggcccca ggtctacggc accttctatg 181 ccatgggcag cgtcatggtg atcgggggca tcatctggag catgtgccag tgctacccca 241 agatcacctt cgtccctgct gactctgact ttcaaggcat cctctcccca aaggccatgg 301 gcctgctgga gaatgggctt gctgccgaga tgaagagccc cagtccccag ccgccctatg 361 taaggctgtg ggaggaagcc gcctatgacc agagcctgcc tgacttcagc cacatccaga 421 tgaaagtcat gagctacagt gaggaccacc gctccttgct ggccctgaga tggggcagcc 481 gaagctggga accagtgatg gaggagaagg tggcctggcg acgttcaggc ctggatggag 541 gctgccgtgg tcatccacaa gggctcagac gagagtnncc aactttcttg tacaaagttg 601 gcattataag aaagcattgc ttatcaattt gttgcaacga ac